Project measure / variable:   GMC09   breaks_YF_mean

ID, description, units MPD:55855   breaks_YF_mean   mean fine movement on Y-axis, 21 h test, 15 min bins   [n]  
Data set, strains GMC09   inbred w/CC8   8 strains     sex: both     age: 12-13wks
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  STRAIN COMPARISON PLOT
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GMC09 - mean fine movement on Y-axis, 21 h test, 15 min bins



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means270   n 222   n
Median of the strain means290   n 253   n
SD of the strain means± 99.6 ± 75.6
Coefficient of variation (CV)0.369 0.341
Min–max range of strain means118   –   411   n 96.6   –   301   n
Mean sample size per strain17.5   mice 16.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 186226.535 186226.535 19.2357 < 0.0001
strain 7 1701918.8299 243131.2614 25.1135 < 0.0001
sex:strain 7 148506.3099 21215.1871 2.1914 0.0355
Residuals 255 2468731.62 9681.3005


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 118.0 44.2   16 11.0 0.375 47.5, 218.0 -1.53
129S1/SvImJ m 96.6 50.8   16 12.7 0.525 27.4, 200.0 -1.65
A/J f 186.0 32.3   16 8.09 0.174 137.0, 250.0 -0.84
A/J m 174.0 44.7   16 11.2 0.257 98.9, 267.0 -0.63
C57BL/6J f 293.0 62.3   16 15.6 0.212 208.0, 413.0 0.23
C57BL/6J m 246.0 35.0   16 8.75 0.142 183.0, 302.0 0.32
CAST/EiJ f 367.0 143.0   19 32.7 0.389 192.0, 842.0 0.97
CAST/EiJ m 294.0 63.4   14 17.0 0.216 214.0, 440.0 0.96
NOD/ShiLtJ f 411.0 231.0   18 54.5 0.563 211.0, 1022.0 1.41
NOD/ShiLtJ m 260.0 44.6   16 11.1 0.171 165.0, 355.0 0.51
NZO/HlLtJ f 185.0 69.8   17 16.9 0.378 94.9, 329.0 -0.85
NZO/HlLtJ m 139.0 35.3   17 8.56 0.255 85.3, 228.0 -1.09
PWK/PhJ f 287.0 59.3   20 13.3 0.207 189.0, 454.0 0.17
PWK/PhJ m 301.0 61.8   20 13.8 0.206 164.0, 408.0 1.05
WSB/EiJ f 314.0 90.6   18 21.4 0.288 195.0, 534.0 0.44
WSB/EiJ m 262.0 191.0   16 47.7 0.728 146.0, 947.0 0.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 117.8937 24.5984 166.3356 69.4519
129S1/SvImJ m 96.6437 24.5984 145.0856 48.2019
A/J f 185.5813 24.5984 234.0231 137.1394
A/J m 173.825 24.5984 222.2669 125.3831
C57BL/6J f 293.425 24.5984 341.8669 244.9831
C57BL/6J m 245.9125 24.5984 294.3544 197.4706
CAST/EiJ f 366.5789 22.573 411.0323 322.1256
CAST/EiJ m 294.0143 26.2968 345.8008 242.2277
NOD/ShiLtJ f 410.6722 23.1916 456.3437 365.0008
NOD/ShiLtJ m 259.9688 24.5984 308.4106 211.5269
NZO/HlLtJ f 184.5353 23.864 231.5308 137.5398
NZO/HlLtJ m 138.5235 23.864 185.5191 91.528
PWK/PhJ f 287.075 22.0015 330.4027 243.7473
PWK/PhJ m 300.64 22.0015 343.9677 257.3123
WSB/EiJ f 314.4111 23.1916 360.0826 268.7397
WSB/EiJ m 262.2875 24.5984 310.7294 213.8456


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 107.2687 17.3937 141.5223 73.0152
A/J both 179.7031 17.3937 213.9567 145.4495
C57BL/6J both 269.6687 17.3937 303.9223 235.4152
CAST/EiJ both 330.2966 17.3282 364.4212 296.172
NOD/ShiLtJ both 335.3205 16.9036 368.609 302.032
NZO/HlLtJ both 161.5294 16.8744 194.7603 128.2986
PWK/PhJ both 293.8575 15.5574 324.4948 263.2202
WSB/EiJ both 288.3493 16.9036 321.6378 255.0608




  GWAS USING LINEAR MIXED MODELS