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Project measure / variable:   GMC09   breaks_XA_mean

ID, description, units MPD:55852   breaks_XA_mean   mean ambulatory movement on X-axis, 21 h test, 15 min bins   [n]  
Data set, strains GMC09   inbred w/CC8   8 strains     sex: both     age: 12-13wks
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  STRAIN COMPARISON PLOT
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GMC09 - mean ambulatory movement on X-axis, 21 h test, 15 min bins



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means617   n 416   n
Median of the strain means508   n 422   n
SD of the strain means± 615 ± 253
Coefficient of variation (CV)0.997 0.608
Min–max range of strain means115   –   2018   n 95.3   –   836   n
Mean sample size per strain17.5   mice 16.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3341706.1515 3341706.1515 3.8764 0.0501
strain 7 38254721.6322 5464960.2332 6.3394 < 0.0001
sex:strain 7 15621528.0524 2231646.8646 2.5887 0.0135
Residuals 255 219827222.961 862067.541


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 115.0 62.0   16 15.5 0.538 28.9, 310.0 -0.82
129S1/SvImJ m 95.3 41.9   16 10.5 0.44 23.1, 152.0 -1.27
A/J f 245.0 43.2   16 10.8 0.176 156.0, 298.0 -0.6
A/J m 273.0 53.0   16 13.3 0.194 171.0, 368.0 -0.57
C57BL/6J f 563.0 125.0   16 31.1 0.221 374.0, 817.0 -0.09
C57BL/6J m 450.0 142.0   16 35.4 0.315 252.0, 778.0 0.14
CAST/EiJ f 819.0 1218.0   19 279.0 1.49 267.0, 5738.0 0.33
CAST/EiJ m 566.0 201.0   14 53.6 0.355 324.0, 1024.0 0.59
NOD/ShiLtJ f 2018.0 2596.0   18 612.0 1.29 495.0, 7795.0 2.28
NOD/ShiLtJ m 597.0 179.0   16 44.8 0.3 381.0, 1046.0 0.72
NZO/HlLtJ f 147.0 56.9   17 13.8 0.386 46.2, 287.0 -0.76
NZO/HlLtJ m 116.0 18.9   17 4.57 0.163 93.8, 160.0 -1.19
PWK/PhJ f 453.0 126.0   20 28.2 0.278 268.0, 759.0 -0.27
PWK/PhJ m 393.0 101.0   20 22.7 0.258 245.0, 624.0 -0.09
WSB/EiJ f 575.0 428.0   18 101.0 0.745 226.0, 1773.0 -0.07
WSB/EiJ m 836.0 2209.0   16 552.0 2.64 192.0, 9109.0 1.66


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 115.1937 232.119 572.3081 -341.9206
129S1/SvImJ m 95.3 232.119 552.4144 -361.8144
A/J f 245.3187 232.119 702.4331 -211.7956
A/J m 273.0625 232.119 730.1769 -184.0519
C57BL/6J f 562.8562 232.119 1019.9706 105.7419
C57BL/6J m 449.7 232.119 906.8144 -7.4144
CAST/EiJ f 818.5684 213.007 1238.0453 399.0915
CAST/EiJ m 565.5357 248.1456 1054.2115 76.8599
NOD/ShiLtJ f 2018.35 218.8439 2449.3216 1587.3784
NOD/ShiLtJ m 597.3813 232.119 1054.4956 140.2669
NZO/HlLtJ f 147.1706 225.1885 590.6367 -296.2955
NZO/HlLtJ m 115.9118 225.1885 559.3778 -327.5543
PWK/PhJ f 453.4 207.6135 862.2555 44.5445
PWK/PhJ m 393.185 207.6135 802.0405 -15.6705
WSB/EiJ f 574.7333 218.8439 1005.7049 143.7618
WSB/EiJ m 835.5937 232.119 1292.7081 378.4794


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 105.2469 164.1329 428.4755 -217.9818
A/J both 259.1906 164.1329 582.4193 -64.038
C57BL/6J both 506.2781 164.1329 829.5068 183.0495
CAST/EiJ both 692.0521 163.5147 1014.0633 370.0408
NOD/ShiLtJ both 1307.8656 159.5085 1621.9874 993.7438
NZO/HlLtJ both 131.5412 159.2323 445.119 -182.0367
PWK/PhJ both 423.2925 146.8049 712.397 134.188
WSB/EiJ both 705.1635 159.5085 1019.2853 391.0417




  GWAS USING LINEAR MIXED MODELS