Project measure / variable:   GMC03   startle_response

ID, description, units MPD:55233   startle_response   startle response, click box (0=no reaction, 1=Preyer reflex, 2=jumping)   [score]  
Data set, strains GMC03   inbred w/CC8   8 strains     sex: both     age: 8-10wks
Procedure observation (SHIRPA)
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  STRAIN COMPARISON PLOT
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GMC03 - startle response, click box (0=no reaction, 1=Preyer reflex, 2=jumping)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means0.980   score 0.991   score
Median of the strain means1.03   score 1.00   score
SD of the strain means± 0.308 ± 0.245
Coefficient of variation (CV)0.315 0.247
Min–max range of strain means0.250   –   1.22   score 0.438   –   1.19   score
Mean sample size per strain17.5   mice 17.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0035 0.0035 0.0315 0.8593
strain 7 17.5019 2.5003 22.3681 < 0.0001
sex:strain 7 0.4286 0.0612 0.5478 0.7976
Residuals 260 29.0623 0.1118


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.0 0.0   16 0.0 0.0 1.0, 1.0 0.06
129S1/SvImJ m 1.0 0.0   16 0.0 0.0 1.0, 1.0 0.04
A/J f 0.25 0.447   16 0.112 1.79 -2.37
A/J m 0.438 0.512   16 0.128 1.17 -2.26
C57BL/6J f 1.06 0.25   16 0.0625 0.235 1.0, 2.0 0.26
C57BL/6J m 1.0 0.0   16 0.0 0.0 1.0, 1.0 0.04
CAST/EiJ f 1.21 0.419   19 0.0961 0.346 1.0, 2.0 0.75
CAST/EiJ m 1.18 0.393   17 0.0953 0.334 1.0, 2.0 0.77
NOD/ShiLtJ f 1.0 0.343   18 0.0808 0.343 0.06
NOD/ShiLtJ m 0.938 0.443   16 0.111 0.472 -0.22
NZO/HlLtJ f 1.0 0.0   17 0.0 0.0 1.0, 1.0 0.06
NZO/HlLtJ m 1.0 0.0   17 0.0 0.0 1.0, 1.0 0.04
PWK/PhJ f 1.1 0.308   20 0.0688 0.28 1.0, 2.0 0.39
PWK/PhJ m 1.18 0.395   22 0.0842 0.334 1.0, 2.0 0.77
WSB/EiJ f 1.22 0.428   18 0.101 0.35 1.0, 2.0 0.78
WSB/EiJ m 1.19 0.403   16 0.101 0.339 1.0, 2.0 0.81


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.0 0.0836 1.1646 0.8354
129S1/SvImJ m 1.0 0.0836 1.1646 0.8354
A/J f 0.25 0.0836 0.4146 0.0854
A/J m 0.4375 0.0836 0.6021 0.2729
C57BL/6J f 1.0625 0.0836 1.2271 0.8979
C57BL/6J m 1.0 0.0836 1.1646 0.8354
CAST/EiJ f 1.2105 0.0767 1.3616 1.0595
CAST/EiJ m 1.1765 0.0811 1.3361 1.0168
NOD/ShiLtJ f 1.0 0.0788 1.1552 0.8448
NOD/ShiLtJ m 0.9375 0.0836 1.1021 0.7729
NZO/HlLtJ f 1.0 0.0811 1.1597 0.8403
NZO/HlLtJ m 1.0 0.0811 1.1597 0.8403
PWK/PhJ f 1.1 0.0748 1.2472 0.9528
PWK/PhJ m 1.1818 0.0713 1.3222 1.0415
WSB/EiJ f 1.2222 0.0788 1.3774 1.067
WSB/EiJ m 1.1875 0.0836 1.3521 1.0229


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1.0 0.0591 1.1164 0.8836
A/J both 0.3438 0.0591 0.4601 0.2274
C57BL/6J both 1.0313 0.0591 1.1476 0.9149
CAST/EiJ both 1.1935 0.0558 1.3034 1.0836
NOD/ShiLtJ both 0.9688 0.0574 1.0819 0.8556
NZO/HlLtJ both 1.0 0.0573 1.1129 0.8871
PWK/PhJ both 1.1409 0.0516 1.2426 1.0392
WSB/EiJ both 1.2049 0.0574 1.318 1.0918




  GWAS USING LINEAR MIXED MODELS