Project measure / variable:   GMC03   vocalization

ID, description, units MPD:55226   vocalization   vocalization (0=no, 1=yes)   [score]  
Data set, strains GMC03   inbred w/CC8   8 strains     sex: both     age: 8-10wks
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  STRAIN COMPARISON PLOT
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GMC03 - vocalization (0=no, 1=yes)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means0.0486   score 0.0624   score
Median of the strain means0   score 0   score
SD of the strain means± 0.138 ± 0.111
Coefficient of variation (CV)2.83 1.77
Min–max range of strain means0   –   0.389   score 0   –   0.312   score
Mean sample size per strain17.5   mice 17.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0054 0.0054 0.1342 0.7144
strain 7 3.5757 0.5108 12.7668 < 0.0001
sex:strain 7 0.201 0.0287 0.7175 0.6572
Residuals 260 10.4028 0.04


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0 0.0   16 0.0 0.0 -0.35
129S1/SvImJ m 0.0 0.0   16 0.0 0.0 -0.56
A/J f 0.0 0.0   16 0.0 0.0 -0.35
A/J m 0.0 0.0   16 0.0 0.0 -0.56
C57BL/6J f 0.0 0.0   16 0.0 0.0 -0.35
C57BL/6J m 0.0625 0.25   16 0.0625 4.0 0.0
CAST/EiJ f 0.0 0.0   19 0.0 0.0 -0.35
CAST/EiJ m 0.0 0.0   17 0.0 0.0 -0.56
NOD/ShiLtJ f 0.0 0.0   18 0.0 0.0 -0.35
NOD/ShiLtJ m 0.125 0.342   16 0.0854 2.73 0.57
NZO/HlLtJ f 0.0 0.0   17 0.0 0.0 -0.35
NZO/HlLtJ m 0.0 0.0   17 0.0 0.0 -0.56
PWK/PhJ f 0.0 0.0   20 0.0 0.0 -0.35
PWK/PhJ m 0.0 0.0   22 0.0 0.0 -0.56
WSB/EiJ f 0.389 0.502   18 0.118 1.29 2.47
WSB/EiJ m 0.312 0.479   16 0.12 1.53 2.26


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0 0.05 0.0985 -0.0985
129S1/SvImJ m 0.0 0.05 0.0985 -0.0985
A/J f 0.0 0.05 0.0985 -0.0985
A/J m 0.0 0.05 0.0985 -0.0985
C57BL/6J f 0.0 0.05 0.0985 -0.0985
C57BL/6J m 0.0625 0.05 0.161 -0.036
CAST/EiJ f 0.0 0.0459 0.0904 -0.0904
CAST/EiJ m 0.0 0.0485 0.0955 -0.0955
NOD/ShiLtJ f 0.0 0.0471 0.0928 -0.0928
NOD/ShiLtJ m 0.125 0.05 0.2235 0.0265
NZO/HlLtJ f 0.0 0.0485 0.0955 -0.0955
NZO/HlLtJ m 0.0 0.0485 0.0955 -0.0955
PWK/PhJ f 0.0 0.0447 0.0881 -0.0881
PWK/PhJ m 0.0 0.0426 0.084 -0.084
WSB/EiJ f 0.3889 0.0471 0.4817 0.2961
WSB/EiJ m 0.3125 0.05 0.411 0.214


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0 0.0354 0.0696 -0.0696
A/J both 0.0 0.0354 0.0696 -0.0696
C57BL/6J both 0.0312 0.0354 0.1009 -0.0384
CAST/EiJ both 0.0 0.0334 0.0657 -0.0657
NOD/ShiLtJ both 0.0625 0.0344 0.1302 -0.0052
NZO/HlLtJ both 0.0 0.0343 0.0675 -0.0675
PWK/PhJ both 0.0 0.0309 0.0608 -0.0608
WSB/EiJ both 0.3507 0.0344 0.4184 0.283




  GWAS USING LINEAR MIXED MODELS