Project measure / variable:   GMC03   urinate

ID, description, units MPD:55222   urinate   urination (0=present, 1=absent)   [score]  
Data set, strains GMC03   inbred w/CC8   8 strains     sex: both     age: 8-10wks
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  STRAIN COMPARISON PLOT
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GMC03 - urination (0=present, 1=absent)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means0.621   score 0.502   score
Median of the strain means0.649   score 0.594   score
SD of the strain means± 0.251 ± 0.226
Coefficient of variation (CV)0.404 0.450
Min–max range of strain means0.150   –   1.00   score 0.136   –   0.750   score
Mean sample size per strain17.5   mice 17.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.1478 1.1478 5.7014 0.0177
strain 7 12.8563 1.8366 9.1225 < 0.0001
sex:strain 7 1.9407 0.2772 1.3771 0.2152
Residuals 260 52.345 0.2013


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.5 0.516   16 0.129 1.03 -0.48
129S1/SvImJ m 0.375 0.5   16 0.125 1.33 -0.56
A/J f 0.812 0.403   16 0.101 0.496 0.76
A/J m 0.625 0.5   16 0.125 0.8 0.54
C57BL/6J f 0.5 0.516   16 0.129 1.03 -0.48
C57BL/6J m 0.562 0.512   16 0.128 0.911 0.26
CAST/EiJ f 0.632 0.496   19 0.114 0.785 0.04
CAST/EiJ m 0.647 0.493   17 0.119 0.761 0.64
NOD/ShiLtJ f 1.0 0.0   18 0.0 0.0 1.0, 1.0 1.51
NOD/ShiLtJ m 0.75 0.447   16 0.112 0.596 1.1
NZO/HlLtJ f 0.706 0.47   17 0.114 0.665 0.34
NZO/HlLtJ m 0.235 0.437   17 0.106 1.86 -1.18
PWK/PhJ f 0.15 0.366   20 0.0819 2.44 -1.88
PWK/PhJ m 0.136 0.351   22 0.0749 2.58 -1.62
WSB/EiJ f 0.667 0.485   18 0.114 0.728 0.18
WSB/EiJ m 0.688 0.479   16 0.12 0.696 0.82


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.5 0.1122 0.7209 0.2791
129S1/SvImJ m 0.375 0.1122 0.5959 0.1541
A/J f 0.8125 0.1122 1.0334 0.5916
A/J m 0.625 0.1122 0.8459 0.4041
C57BL/6J f 0.5 0.1122 0.7209 0.2791
C57BL/6J m 0.5625 0.1122 0.7834 0.3416
CAST/EiJ f 0.6316 0.1029 0.8343 0.4289
CAST/EiJ m 0.6471 0.1088 0.8613 0.4328
NOD/ShiLtJ f 1.0 0.1058 1.2083 0.7917
NOD/ShiLtJ m 0.75 0.1122 0.9709 0.5291
NZO/HlLtJ f 0.7059 0.1088 0.9202 0.4916
NZO/HlLtJ m 0.2353 0.1088 0.4496 0.021
PWK/PhJ f 0.15 0.1003 0.3476 -0.0476
PWK/PhJ m 0.1364 0.0957 0.3247 -0.052
WSB/EiJ f 0.6667 0.1058 0.8749 0.4584
WSB/EiJ m 0.6875 0.1122 0.9084 0.4666


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.4375 0.0793 0.5937 0.2813
A/J both 0.7187 0.0793 0.8749 0.5626
C57BL/6J both 0.5312 0.0793 0.6874 0.3751
CAST/EiJ both 0.6393 0.0749 0.7868 0.4918
NOD/ShiLtJ both 0.875 0.0771 1.0268 0.7232
NZO/HlLtJ both 0.4706 0.077 0.6221 0.3191
PWK/PhJ both 0.1432 0.0693 0.2797 0.0067
WSB/EiJ both 0.6771 0.0771 0.8289 0.5253




  GWAS USING LINEAR MIXED MODELS