Project measure / variable:   GMC03   coat_app

ID, description, units MPD:55211   coat_app   coat appearance (1=tidy, 2=irregular)   [score]  
Data set, strains GMC03   inbred w/CC8   8 strains     sex: both     age: 8-10wks
Procedure observation (SHIRPA)
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  STRAIN COMPARISON PLOT
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GMC03 - coat appearance (1=tidy, 2=irregular)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means0.0294   score 0.137   score
Median of the strain means0   score 0   score
SD of the strain means± 0.0831 ± 0.207
Coefficient of variation (CV)2.83 1.51
Min–max range of strain means0   –   0.235   score 0   –   0.471   score
Mean sample size per strain17.5   mice 17.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.743 0.743 14.1329 0.0002
strain 7 4.2639 0.6091 11.5863 < 0.0001
sex:strain 7 1.5703 0.2243 4.267 0.0002
Residuals 260 13.6691 0.0526


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.0 0.0   16 0.0 0.0 -0.35
129S1/SvImJ m 0.0 0.0   16 0.0 0.0 -0.66
A/J f 0.0 0.0   16 0.0 0.0 -0.35
A/J m 0.0 0.0   16 0.0 0.0 -0.66
C57BL/6J f 0.0 0.0   16 0.0 0.0 -0.35
C57BL/6J m 0.438 0.512   16 0.128 1.17 1.46
CAST/EiJ f 0.0 0.0   19 0.0 0.0 -0.35
CAST/EiJ m 0.0 0.0   17 0.0 0.0 -0.66
NOD/ShiLtJ f 0.0 0.0   18 0.0 0.0 -0.35
NOD/ShiLtJ m 0.188 0.403   16 0.101 2.15 0.25
NZO/HlLtJ f 0.235 0.437   17 0.106 1.86 2.47
NZO/HlLtJ m 0.471 0.514   17 0.125 1.09 1.62
PWK/PhJ f 0.0 0.0   20 0.0 0.0 -0.35
PWK/PhJ m 0.0 0.0   22 0.0 0.0 -0.66
WSB/EiJ f 0.0 0.0   18 0.0 0.0 -0.35
WSB/EiJ m 0.0 0.0   16 0.0 0.0 -0.66


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.0 0.0573 0.1129 -0.1129
129S1/SvImJ m 0.0 0.0573 0.1129 -0.1129
A/J f 0.0 0.0573 0.1129 -0.1129
A/J m 0.0 0.0573 0.1129 -0.1129
C57BL/6J f 0.0 0.0573 0.1129 -0.1129
C57BL/6J m 0.4375 0.0573 0.5504 0.3246
CAST/EiJ f 0.0 0.0526 0.1036 -0.1036
CAST/EiJ m 0.0 0.0556 0.1095 -0.1095
NOD/ShiLtJ f 0.0 0.054 0.1064 -0.1064
NOD/ShiLtJ m 0.1875 0.0573 0.3004 0.0746
NZO/HlLtJ f 0.2353 0.0556 0.3448 0.1258
NZO/HlLtJ m 0.4706 0.0556 0.5801 0.3611
PWK/PhJ f 0.0 0.0513 0.101 -0.101
PWK/PhJ m 0.0 0.0489 0.0963 -0.0963
WSB/EiJ f 0.0 0.054 0.1064 -0.1064
WSB/EiJ m 0.0 0.0573 0.1129 -0.1129


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0 0.0405 0.0798 -0.0798
A/J both 0.0 0.0405 0.0798 -0.0798
C57BL/6J both 0.2188 0.0405 0.2986 0.1389
CAST/EiJ both 0.0 0.0383 0.0754 -0.0754
NOD/ShiLtJ both 0.0937 0.0394 0.1713 0.0162
NZO/HlLtJ both 0.3529 0.0393 0.4304 0.2755
PWK/PhJ both 0.0 0.0354 0.0697 -0.0697
WSB/EiJ both 0.0 0.0394 0.0776 -0.0776




  GWAS USING LINEAR MIXED MODELS