Phenotype measure:   Vanderlinden1   PC1

ID, description, units MPD:54331   PC1   first principal component on log transformed 'drinking in the dark' measurements (days 2, 3, 4)  
Data set, strains Vanderlinden1   ILSXISS   38 strains     sex: both     age: 8-23wks
Procedure intake monitoring
Ontology mappings

  STRAIN COMPARISON PLOT
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Vanderlinden1 - first principal component on log transformed 'drinking in the dark' measurements (days 2, 3, 4)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested36 strains38 strains
Mean of the strain means-0.108   None -0.0549   None
Median of the strain means0.0182   None -0.0434   None
SD of the strain means± 0.984 ± 1.02
Coefficient of variation (CV)-9.13 -18.6
Min–max range of strain means-2.93   –   1.47   None -2.43   –   2.10   None
Mean sample size per strain8.0   mice 8.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.2081 0.2081 0.1661 0.6837
strain 30 370.192 12.3397 9.8499 < 0.0001
sex:strain 30 79.2708 2.6424 2.1092 0.0007
Residuals 471 590.0586 1.2528


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
ILSXISS10 f -0.0564 1.12   14 0.3 -19.9 -2.48, 1.47 0.05
ILSXISS10 m -0.569 1.45   14 0.387 -2.55 -3.08, 1.54 -0.5
ILSXISS100/TejJ m -0.743 0.561   4 0.28 -0.755 -1.13, 0.09 -0.67
ILSXISS101/TejJ f 0.868 0.563   5 0.252 0.649 0.09, 1.44 0.99
ILSXISS103/TejJ f 0.106 1.1   10 0.346 10.3 -1.2, 2.09 0.22
ILSXISS103/TejJ m 0.55 0.973   10 0.308 1.77 -0.74, 1.96 0.59
ILSXISS107/TejJ f -0.252 1.07   10 0.338 -4.24 -1.81, 1.43 -0.15
ILSXISS107/TejJ m -0.584 1.26   10 0.399 -2.16 -2.46, 0.97 -0.52
ILSXISS110/TejJ f -0.317 0.998   9 0.333 -3.15 -2.26, 0.65 -0.21
ILSXISS110/TejJ m -0.562 0.879   8 0.311 -1.56 -1.91, 0.56 -0.5
ILSXISS112/TejJ f -1.0 0.871   8 0.308 -0.871 -2.21, 0.67 -0.91
ILSXISS112/TejJ m -1.48 1.01   7 0.383 -0.683 -2.6, -0.08 -1.4
ILSXISS114/TejJ f 0.0927 0.819   11 0.247 8.83 -1.2, 0.93 0.2
ILSXISS114/TejJ m 0.683 0.769   9 0.256 1.13 -0.36, 1.69 0.72
ILSXISS115/TejJ f -1.13 1.55   5 0.693 -1.37 -3.01, 0.39 -1.04
ILSXISS13/TejJ f 0.392 1.3   10 0.412 3.32 -2.46, 1.85 0.51
ILSXISS13/TejJ m 0.035 0.656   10 0.207 18.7 -0.98, 1.18 0.09
ILSXISS14/TejJ f 0.586 0.63   9 0.21 1.08 -0.58, 1.45 0.71
ILSXISS14/TejJ m 0.333 0.698   10 0.221 2.09 -1.04, 1.26 0.38
ILSXISS16/TejJ f -0.373 0.12   4 0.0601 -0.322 -0.5, -0.21 -0.27
ILSXISS19/TejJ f 0.456 1.17   10 0.37 2.56 -2.34, 1.39 0.57
ILSXISS19/TejJ m -0.623 1.28   10 0.405 -2.05 -2.5, 1.45 -0.56
ILSXISS22/TejJ f -0.96 1.48   3 0.856 -1.54 -2.23, 0.67 -0.87
ILSXISS22/TejJ m 0.28 1.47   10 0.466 5.27 -1.6, 2.87 0.33
ILSXISS23/TejJ f 0.69 1.17   4 0.584 1.69 -0.91, 1.8 0.81
ILSXISS23/TejJ m -0.025 0.0212   2   0.015 -0.849 -0.04, -0.01 0.03
ILSXISS24/TejJ f -0.857 0.976   10 0.309 -1.14 -2.74, 0.36 -0.76
ILSXISS24/TejJ m -0.0618 1.22   11 0.369 -19.8 -2.03, 1.25 -0.01
ILSXISS25/TejJ m 1.8 0.418   9 0.139 0.232 1.06, 2.59 1.82
ILSXISS26/TejJ f 1.41 0.496   8 0.175 0.351 0.47, 2.05 1.54
ILSXISS26/TejJ m 2.1 0.833   10 0.263 0.396 0.94, 3.43 2.11
ILSXISS28/TejJ m -2.43 0.456   5 0.204 -0.188 -3.08, -1.97 -2.33
ILSXISS32/TejJ f 0.539 0.597   10 0.189 1.11 -0.16, 1.68 0.66
ILSXISS32/TejJ m 1.52 0.409   3 0.236 0.269 1.25, 1.99 1.54
ILSXISS34/TejJ m 1.01 0.351   5 0.157 0.347 0.5, 1.48 1.04
ILSXISS36/TejJ f -0.104 1.07   10 0.34 -10.3 -2.1, 1.33 0.0
ILSXISS3/TejJ m 0.252 1.37   6 0.559 5.44 -2.0, 1.56 0.3
ILSXISS41/TejJ f -1.24 1.11   4 0.556 -0.895 -2.47, 0.23 -1.15
ILSXISS41/TejJ m -2.11 0.555   8 0.196 -0.264 -2.51, -0.91 -2.01
ILSXISS43/TejJ f -0.363 1.38   11 0.417 -3.82 -2.23, 2.22 -0.26
ILSXISS43/TejJ m -0.183 1.08   10 0.34 -5.88 -1.72, 1.58 -0.13
ILSXISS46/TejJ f -0.235 0.886   10 0.28 -3.77 -1.83, 1.29 -0.13
ILSXISS46/TejJ m -0.476 0.786   7 0.297 -1.65 -1.75, 0.4 -0.41
ILSXISS48/TejJ f 0.5 0.552   4 0.276 1.1 -0.26, 1.0 0.62
ILSXISS49/TejJ f 1.47 1.49   9 0.498 1.02 -0.81, 4.15 1.6
ILSXISS49/TejJ m -0.355 1.12   11 0.338 -3.16 -2.0, 1.16 -0.29
ILSXISS50/TejJ m 0.09 0.738   4 0.369 8.2 -0.54, 1.12 0.14
ILSXISS51/TejJ f -1.49 2.05   3 1.18 -1.38 -3.19, 0.79 -1.4
ILSXISS51/TejJ m -1.8 0.628   4 0.314 -0.348 -2.55, -1.04 -1.71
ILSXISS56/TejJ f 0.732 0.553   4 0.276 0.754 0.13, 1.46 0.85
ILSXISS56/TejJ m 0.092 1.79   5 0.803 19.5 -3.08, 1.08 0.14
ILSXISS5/TejJ f 0.181 1.53   7 0.577 8.42 -2.38, 1.61 0.29
ILSXISS5/TejJ m 0.995 0.78   12 0.225 0.784 -0.49, 2.34 1.03
ILSXISS66/TejJ f -0.838 0.956   9 0.319 -1.14 -1.85, 1.1 -0.74
ILSXISS66/TejJ m -1.09 0.99   10 0.313 -0.911 -2.18, 0.95 -1.01
ILSXISS68 f -0.101 0.892   9 0.297 -8.82 -1.45, 1.25 0.01
ILSXISS68 m -0.119 1.19   9 0.398 -10.0 -2.31, 1.3 -0.06
ILSXISS72/TejJ f 1.37 0.959   12 0.277 0.699 -1.38, 2.5 1.5
ILSXISS72/TejJ m 1.84 0.958   12 0.277 0.52 0.18, 3.45 1.86
ILSXISS7/TejJ m 0.207 0.539   4 0.27 2.6 -0.25, 0.94 0.26
ILSXISS80/TejJ f -2.01 1.61   3 0.928 -0.799 -3.19, -0.18 -1.93
ILSXISS80/TejJ m -0.473 1.65   4 0.827 -3.5 -2.12, 1.46 -0.41
ILSXISS89/TejJ f -1.38 1.62   9 0.539 -1.17 -3.9, 0.81 -1.29
ILSXISS89/TejJ m -0.881 0.914   9 0.305 -1.04 -2.52, 0.61 -0.81
ILSXISS90/TejJ f 0.481 1.17   8 0.414 2.43 -0.99, 1.92 0.6
ILSXISS90/TejJ m 0.842 0.627   5 0.28 0.744 0.03, 1.76 0.88
ILSXISS92/TejJ f 0.792 1.3   11 0.392 1.64 -2.22, 2.48 0.91
ILSXISS92/TejJ m 0.439 1.0   15 0.259 2.29 -1.43, 1.66 0.48
ILSXISS93/TejJ f -2.93 0.685   7 0.259 -0.233 -3.9, -1.95 -2.87
ILSXISS93/TejJ m -0.707 1.42   11 0.429 -2.01 -2.54, 2.01 -0.64
ILSXISS94/TejJ f 0.144 1.59   10 0.502 11.0 -2.52, 2.09 0.26
ILSXISS94/TejJ m -0.471 2.02   9 0.674 -4.29 -3.08, 2.62 -0.41
ILSXISS99/TejJ f 0.947 0.891   8 0.315 0.94 -0.46, 1.95 1.07
ILSXISS99/TejJ m 0.589 1.04   8 0.366 1.76 -0.86, 2.15 0.63


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
ILSXISS10 f -0.0564 0.2991 0.5314 -0.6442
ILSXISS10 m -0.5693 0.2991 0.0185 -1.1571
ILSXISS103/TejJ f 0.106 0.3539 0.8015 -0.5895
ILSXISS103/TejJ m 0.55 0.3539 1.2455 -0.1455
ILSXISS107/TejJ f -0.252 0.3539 0.4435 -0.9475
ILSXISS107/TejJ m -0.584 0.3539 0.1115 -1.2795
ILSXISS110/TejJ f -0.3167 0.3731 0.4165 -1.0498
ILSXISS110/TejJ m -0.5625 0.3957 0.2151 -1.3401
ILSXISS112/TejJ f -1.0 0.3957 -0.2224 -1.7776
ILSXISS112/TejJ m -1.4829 0.423 -0.6516 -2.3141
ILSXISS114/TejJ f 0.0927 0.3375 0.7559 -0.5704
ILSXISS114/TejJ m 0.6833 0.3731 1.4165 -0.0498
ILSXISS13/TejJ f 0.392 0.3539 1.0875 -0.3035
ILSXISS13/TejJ m 0.035 0.3539 0.7305 -0.6605
ILSXISS14/TejJ f 0.5856 0.3731 1.3187 -0.1476
ILSXISS14/TejJ m 0.333 0.3539 1.0285 -0.3625
ILSXISS19/TejJ f 0.456 0.3539 1.1515 -0.2395
ILSXISS19/TejJ m -0.623 0.3539 0.0725 -1.3185
ILSXISS22/TejJ f -0.96 0.6462 0.3098 -2.2298
ILSXISS22/TejJ m 0.28 0.3539 0.9755 -0.4155
ILSXISS23/TejJ f 0.69 0.5596 1.7897 -0.4097
ILSXISS23/TejJ m -0.025 0.7914 1.5302 -1.5802
ILSXISS24/TejJ f -0.857 0.3539 -0.1615 -1.5525
ILSXISS24/TejJ m -0.0618 0.3375 0.6013 -0.725
ILSXISS26/TejJ f 1.41 0.3957 2.1876 0.6324
ILSXISS26/TejJ m 2.104 0.3539 2.7995 1.4085
ILSXISS32/TejJ f 0.539 0.3539 1.2345 -0.1565
ILSXISS32/TejJ m 1.52 0.6462 2.7898 0.2502
ILSXISS41/TejJ f -1.2425 0.5596 -0.1428 -2.3422
ILSXISS41/TejJ m -2.1062 0.3957 -1.3286 -2.8839
ILSXISS43/TejJ f -0.3627 0.3375 0.3004 -1.0259
ILSXISS43/TejJ m -0.183 0.3539 0.5125 -0.8785
ILSXISS46/TejJ f -0.235 0.3539 0.4605 -0.9305
ILSXISS46/TejJ m -0.4757 0.423 0.3556 -1.307
ILSXISS49/TejJ f 1.4689 0.3731 2.202 0.7358
ILSXISS49/TejJ m -0.3555 0.3375 0.3077 -1.0186
ILSXISS51/TejJ f -1.49 0.6462 -0.2202 -2.7598
ILSXISS51/TejJ m -1.805 0.5596 -0.7053 -2.9047
ILSXISS56/TejJ f 0.7325 0.5596 1.8322 -0.3672
ILSXISS56/TejJ m 0.092 0.5006 1.0756 -0.8916
ILSXISS5/TejJ f 0.1814 0.423 1.0127 -0.6499
ILSXISS5/TejJ m 0.995 0.3231 1.6299 0.3601
ILSXISS66/TejJ f -0.8378 0.3731 -0.1046 -1.5709
ILSXISS66/TejJ m -1.087 0.3539 -0.3915 -1.7825
ILSXISS68 f -0.1011 0.3731 0.632 -0.8342
ILSXISS68 m -0.1189 0.3731 0.6142 -0.852
ILSXISS72/TejJ f 1.3717 0.3231 2.0066 0.7368
ILSXISS72/TejJ m 1.8417 0.3231 2.4766 1.2068
ILSXISS80/TejJ f -2.01 0.6462 -0.7402 -3.2798
ILSXISS80/TejJ m -0.4725 0.5596 0.6272 -1.5722
ILSXISS89/TejJ f -1.3844 0.3731 -0.6513 -2.1176
ILSXISS89/TejJ m -0.8811 0.3731 -0.148 -1.6142
ILSXISS90/TejJ f 0.4813 0.3957 1.2589 -0.2964
ILSXISS90/TejJ m 0.842 0.5006 1.8256 -0.1416
ILSXISS92/TejJ f 0.7918 0.3375 1.455 0.1287
ILSXISS92/TejJ m 0.4387 0.289 1.0065 -0.1292
ILSXISS93/TejJ f -2.9329 0.423 -2.1016 -3.7641
ILSXISS93/TejJ m -0.7073 0.3375 -0.0441 -1.3704
ILSXISS94/TejJ f 0.144 0.3539 0.8395 -0.5515
ILSXISS94/TejJ m -0.4711 0.3731 0.262 -1.2042
ILSXISS99/TejJ f 0.9475 0.3957 1.7251 0.1699
ILSXISS99/TejJ m 0.5888 0.3957 1.3664 -0.1889


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
ILSXISS10 both -0.3129 0.2115 0.1028 -0.7285
ILSXISS103/TejJ both 0.328 0.2503 0.8198 -0.1638
ILSXISS107/TejJ both -0.418 0.2503 0.0738 -0.9098
ILSXISS110/TejJ both -0.4396 0.2719 0.0948 -0.9739
ILSXISS112/TejJ both -1.2414 0.2896 -0.6723 -1.8106
ILSXISS114/TejJ both 0.388 0.2515 0.8823 -0.1062
ILSXISS13/TejJ both 0.2135 0.2503 0.7053 -0.2783
ILSXISS14/TejJ both 0.4593 0.2571 0.9646 -0.046
ILSXISS19/TejJ both -0.0835 0.2503 0.4083 -0.5753
ILSXISS22/TejJ both -0.34 0.3684 0.3839 -1.0639
ILSXISS23/TejJ both 0.3325 0.4847 1.2849 -0.6199
ILSXISS24/TejJ both -0.4594 0.2445 0.0211 -0.9399
ILSXISS26/TejJ both 1.757 0.2655 2.2786 1.2354
ILSXISS32/TejJ both 1.0295 0.3684 1.7534 0.3056
ILSXISS41/TejJ both -1.6744 0.3427 -1.001 -2.3478
ILSXISS43/TejJ both -0.2729 0.2445 0.2076 -0.7534
ILSXISS46/TejJ both -0.3554 0.2758 0.1866 -0.8973
ILSXISS49/TejJ both 0.5567 0.2515 1.051 0.0624
ILSXISS51/TejJ both -1.6475 0.4274 -0.8076 -2.4874
ILSXISS56/TejJ both 0.4123 0.3754 1.1499 -0.3254
ILSXISS5/TejJ both 0.5882 0.2662 1.1112 0.0652
ILSXISS66/TejJ both -0.9624 0.2571 -0.4571 -1.4677
ILSXISS68 both -0.11 0.2638 0.4084 -0.6284
ILSXISS72/TejJ both 1.6067 0.2285 2.0556 1.1577
ILSXISS80/TejJ both -1.2413 0.4274 -0.4013 -2.0812
ILSXISS89/TejJ both -1.1328 0.2638 -0.6144 -1.6512
ILSXISS90/TejJ both 0.6616 0.319 1.2885 0.0347
ILSXISS92/TejJ both 0.6152 0.2222 1.0518 0.1787
ILSXISS93/TejJ both -1.8201 0.2706 -1.2884 -2.3518
ILSXISS94/TejJ both -0.1636 0.2571 0.3417 -0.6688
ILSXISS99/TejJ both 0.7681 0.2798 1.318 0.2183




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CKB, or AXBBXA