Project measure / variable:   Loos2   long_shelter_num_LT

ID, description, units MPD:54072   long_shelter_num_LT   cumulative number of long shelter visits (sheltering), over 3 days of testing, log10 transformed   [log(n)]  during light phase  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
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  STRAIN COMPARISON PLOT
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Loos2 - cumulative number of long shelter visits (sheltering), over 3 days of testing, log10 transformed during light phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means0.766   log(n)
Median of the strain means0.762   log(n)
SD of the strain means± 0.0849
Coefficient of variation (CV)0.111
Min–max range of strain means0.625   –   0.877   log(n)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 2.7743 0.2774 18.9474 < 0.0001
Residuals 426 6.2376 0.0146


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.726 0.111   59 0.0145 0.153 0.477, 0.964 -0.47
A/J m 0.665 0.178   43 0.0271 0.267 0.041, 1.03 -1.18
BALB/cByJ m 0.72 0.0831   44 0.0125 0.115 0.602, 0.914 -0.54
C3H/HeJ m 0.706 0.127   29 0.0235 0.179 0.477, 1.06 -0.7
C57BL/6J m 0.821 0.0881   107 0.00852 0.107 0.505, 1.09 0.65
CAST/EiJ m 0.795 0.121   14 0.0324 0.152 0.477, 1.01 0.35
DBA/2J m 0.625 0.142   39 0.0227 0.227 0.301, 0.857 -1.66
FVB/NJ m 0.868 0.118   36 0.0197 0.136 0.699, 1.09 1.21
NOD/ShiLtJ m 0.877 0.113   37 0.0186 0.129 0.602, 1.06 1.31
PWK/PhJ m 0.762 0.0907   15 0.0234 0.119 0.602, 0.914 -0.04
WSB/EiJ m 0.856 0.216   14 0.0578 0.253 0.623, 1.49 1.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.7255 0.0158 0.7565 0.6946
A/J m 0.665 0.0185 0.7013 0.6288
BALB/cByJ m 0.7198 0.0182 0.7556 0.6839
C3H/HeJ m 0.7058 0.0225 0.7499 0.6616
C57BL/6J m 0.8206 0.0117 0.8436 0.7976
CAST/EiJ m 0.7955 0.0323 0.8591 0.7319
DBA/2J m 0.6254 0.0194 0.6635 0.5873
FVB/NJ m 0.8678 0.0202 0.9075 0.8282
NOD/ShiLtJ m 0.8767 0.0199 0.9158 0.8376
PWK/PhJ m 0.7618 0.0312 0.8232 0.7003
WSB/EiJ m 0.8557 0.0323 0.9193 0.7922




  GWAS USING LINEAR MIXED MODELS