Project measure / variable:   Loos2   long_shelter_num_DK

ID, description, units MPD:54071   long_shelter_num_DK   cumulative number of long shelter visits (sheltering), over 3 days of testing, log10 transformed   [log(n)]  during dark phase  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
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  STRAIN COMPARISON PLOT
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Loos2 - cumulative number of long shelter visits (sheltering), over 3 days of testing, log10 transformed during dark phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means0.804   log(n)
Median of the strain means0.823   log(n)
SD of the strain means± 0.148
Coefficient of variation (CV)0.184
Min–max range of strain means0.473   –   1.03   log(n)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 6.4924 0.6492 14.6587 < 0.0001
Residuals 426 18.8678 0.0443


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.03 0.184   59 0.024 0.179 0.477, 1.37 1.53
A/J m 0.858 0.236   43 0.036 0.275 0.602, 2.01 0.36
BALB/cByJ m 0.66 0.135   44 0.0204 0.205 0.477, 1.02 -0.97
C3H/HeJ m 0.814 0.188   29 0.0348 0.23 0.477, 1.13 0.07
C57BL/6J m 0.772 0.182   107 0.0176 0.235 -0.22
CAST/EiJ m 0.727 0.0815   14 0.0218 0.112 0.602, 0.914 -0.52
DBA/2J m 0.929 0.313   39 0.0502 0.337 0.84
FVB/NJ m 0.854 0.142   36 0.0237 0.167 0.477, 1.12 0.34
NOD/ShiLtJ m 0.823 0.296   37 0.0487 0.36 0.13
PWK/PhJ m 0.473 0.1   15 0.0258 0.212 0.301, 0.623 -2.23
WSB/EiJ m 0.903 0.336   14 0.0899 0.373 0.67


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.0273 0.0274 1.0812 0.9734
A/J m 0.8576 0.0321 0.9207 0.7945
BALB/cByJ m 0.6604 0.0317 0.7228 0.5981
C3H/HeJ m 0.8138 0.0391 0.8906 0.737
C57BL/6J m 0.7717 0.0203 0.8117 0.7317
CAST/EiJ m 0.7274 0.0562 0.8379 0.6168
DBA/2J m 0.9291 0.0337 0.9953 0.8629
FVB/NJ m 0.8538 0.0351 0.9227 0.7848
NOD/ShiLtJ m 0.8229 0.0346 0.8909 0.7549
PWK/PhJ m 0.4726 0.0543 0.5794 0.3658
WSB/EiJ m 0.9026 0.0562 1.0132 0.7921




  GWAS USING LINEAR MIXED MODELS