Project measure / variable:   Loos2   short_arrest_num_DK

ID, description, units MPD:54063   short_arrest_num_DK   cumulative number of short arrests, over 3 days of testing, log10 transformed   [log(n)]  during dark phase  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
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  STRAIN COMPARISON PLOT
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Loos2 - cumulative number of short arrests, over 3 days of testing, log10 transformed during dark phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means3.58   log(n)
Median of the strain means3.58   log(n)
SD of the strain means± 0.201
Coefficient of variation (CV)0.0561
Min–max range of strain means3.19   –   3.93   log(n)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 15.6557 1.5656 118.5187 < 0.0001
Residuals 426 5.6273 0.0132


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 3.37 0.149   59 0.0194 0.0441 3.06, 3.73 -1.07
A/J m 3.74 0.103   43 0.0157 0.0276 3.45, 3.95 0.77
BALB/cByJ m 3.93 0.0775   44 0.0117 0.0198 3.73, 4.09 1.72
C3H/HeJ m 3.19 0.0987   29 0.0183 0.0309 2.99, 3.37 -1.96
C57BL/6J m 3.64 0.0956   107 0.00924 0.0263 3.38, 3.84 0.28
CAST/EiJ m 3.57 0.16   14 0.0427 0.0447 3.35, 3.79 -0.07
DBA/2J m 3.48 0.0865   39 0.0139 0.0249 3.29, 3.65 -0.52
FVB/NJ m 3.54 0.148   36 0.0247 0.0418 3.22, 3.9 -0.22
NOD/ShiLtJ m 3.79 0.131   37 0.0216 0.0346 3.36, 4.06 1.02
PWK/PhJ m 3.58 0.117   15 0.0301 0.0326 3.34, 3.77 -0.02
WSB/EiJ m 3.6 0.124   14 0.0332 0.0346 3.4, 3.8 0.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 3.3732 0.015 3.4026 3.3438
A/J m 3.7351 0.0175 3.7695 3.7006
BALB/cByJ m 3.9252 0.0173 3.9592 3.8911
C3H/HeJ m 3.1887 0.0213 3.2307 3.1468
C57BL/6J m 3.6392 0.0111 3.6611 3.6174
CAST/EiJ m 3.5724 0.0307 3.6328 3.5121
DBA/2J m 3.4768 0.0184 3.513 3.4406
FVB/NJ m 3.5398 0.0192 3.5774 3.5021
NOD/ShiLtJ m 3.7932 0.0189 3.8303 3.7561
PWK/PhJ m 3.5792 0.0297 3.6375 3.5209
WSB/EiJ m 3.5985 0.0307 3.6589 3.5381




  GWAS USING LINEAR MIXED MODELS