Phenotype measure:   Loos2   short_move_dist_LT

ID, description, units MPD:54053   short_move_dist_LT   cumulative short movement distance, over 3 days of testing, log10 transformed   [log(cm)]  during light phase
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
Ontology mappings

  STRAIN COMPARISON PLOT
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Loos2 - cumulative short movement distance, over 3 days of testing, log10 transformed during light phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means2.72   log(cm)
Median of the strain means2.61   log(cm)
SD of the strain means± 0.320
Coefficient of variation (CV)0.118
Min–max range of strain means2.15   –   3.21   log(cm)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 36.9688 3.6969 38.8349 < 0.0001
Residuals 426 40.5529 0.0952


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 2.51 0.367   59 0.0478 0.146 1.59, 3.15 -0.66
A/J m 2.5 0.403   43 0.0614 0.161 0.567, 3.06 -0.69
BALB/cByJ m 2.98 0.298   44 0.045 0.0999 2.37, 3.57 0.81
C3H/HeJ m 2.5 0.192   29 0.0356 0.0767 2.01, 2.91 -0.69
C57BL/6J m 2.77 0.231   107 0.0223 0.0834 2.24, 3.33 0.15
CAST/EiJ m 3.06 0.135   14 0.036 0.0441 2.86, 3.32 1.06
DBA/2J m 2.15 0.387   39 0.0619 0.18 1.11, 2.96 -1.78
FVB/NJ m 3.21 0.208   36 0.0347 0.0648 2.9, 3.59 1.52
NOD/ShiLtJ m 3.05 0.384   37 0.0631 0.126 2.16, 3.83 1.02
PWK/PhJ m 2.6 0.167   15 0.0432 0.0645 2.34, 2.94 -0.38
WSB/EiJ m 2.61 0.419   14 0.112 0.16 1.81, 3.43 -0.35


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 2.5108 0.0402 2.5897 2.4318
A/J m 2.5001 0.0471 2.5926 2.4077
BALB/cByJ m 2.9842 0.0465 3.0757 2.8928
C3H/HeJ m 2.4987 0.0573 2.6113 2.3861
C57BL/6J m 2.7661 0.0298 2.8247 2.7075
CAST/EiJ m 3.0569 0.0825 3.219 2.8948
DBA/2J m 2.1458 0.0494 2.2429 2.0487
FVB/NJ m 3.2146 0.0514 3.3156 3.1135
NOD/ShiLtJ m 3.0471 0.0507 3.1468 2.9474
PWK/PhJ m 2.5957 0.0797 2.7522 2.4391
WSB/EiJ m 2.6125 0.0825 2.7746 2.4504




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.