Project measure / variable:   Loos2   short_move_dist_DK

ID, description, units MPD:54052   short_move_dist_DK   cumulative short movement distance, over 3 days of testing, log10 transformed   [log(cm)]  during dark phase  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
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  STRAIN COMPARISON PLOT
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Loos2 - cumulative short movement distance, over 3 days of testing, log10 transformed during dark phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means3.45   log(cm)
Median of the strain means3.43   log(cm)
SD of the strain means± 0.283
Coefficient of variation (CV)0.0820
Min–max range of strain means2.96   –   3.91   log(cm)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 31.2053 3.1205 125.695 < 0.0001
Residuals 426 10.576 0.0248


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 3.16 0.157   59 0.0205 0.0497 2.79, 3.43 -1.04
A/J m 3.59 0.17   43 0.0259 0.0472 3.24, 4.12 0.48
BALB/cByJ m 3.87 0.108   44 0.0162 0.0278 3.54, 4.06 1.47
C3H/HeJ m 2.96 0.119   29 0.0222 0.0403 2.72, 3.19 -1.75
C57BL/6J m 3.58 0.148   107 0.0143 0.0413 3.27, 3.97 0.44
CAST/EiJ m 3.42 0.176   14 0.047 0.0514 3.17, 3.76 -0.12
DBA/2J m 3.26 0.0988   39 0.0158 0.0303 3.04, 3.46 -0.69
FVB/NJ m 3.43 0.203   36 0.0338 0.0591 3.01, 3.77 -0.09
NOD/ShiLtJ m 3.91 0.231   37 0.0379 0.059 3.23, 4.29 1.61
PWK/PhJ m 3.33 0.134   15 0.0345 0.0401 3.1, 3.56 -0.44
WSB/EiJ m 3.49 0.163   14 0.0436 0.0468 3.18, 3.7 0.13


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 3.1637 0.0205 3.204 3.1234
A/J m 3.5935 0.024 3.6407 3.5463
BALB/cByJ m 3.8674 0.0238 3.9141 3.8207
C3H/HeJ m 2.9607 0.0293 3.0182 2.9032
C57BL/6J m 3.5788 0.0152 3.6087 3.5488
CAST/EiJ m 3.4221 0.0421 3.5049 3.3394
DBA/2J m 3.2614 0.0252 3.311 3.2118
FVB/NJ m 3.4308 0.0263 3.4824 3.3792
NOD/ShiLtJ m 3.9135 0.0259 3.9644 3.8626
PWK/PhJ m 3.3309 0.0407 3.4109 3.251
WSB/EiJ m 3.4881 0.0421 3.5709 3.4054




  GWAS USING LINEAR MIXED MODELS