Project measure / variable:   Loos2   short_move_num_DK

ID, description, units MPD:54048   short_move_num_DK   cumulative short movement number, over 3 days of testing, log10 transformed   [log(n)]  during dark phase  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
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  STRAIN COMPARISON PLOT
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Loos2 - cumulative short movement number, over 3 days of testing, log10 transformed during dark phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means3.39   log(n)
Median of the strain means3.36   log(n)
SD of the strain means± 0.216
Coefficient of variation (CV)0.0637
Min–max range of strain means3.00   –   3.75   log(n)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 18.342 1.8342 121.5614 < 0.0001
Residuals 426 6.4278 0.0151


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 3.16 0.137   59 0.0178 0.0434 2.85, 3.47 -1.05
A/J m 3.53 0.13   43 0.0198 0.0369 3.21, 3.84 0.66
BALB/cByJ m 3.75 0.0835   44 0.0126 0.0223 3.54, 3.93 1.68
C3H/HeJ m 3.0 0.101   29 0.0187 0.0335 2.8, 3.22 -1.8
C57BL/6J m 3.45 0.0986   107 0.00953 0.0286 3.23, 3.69 0.29
CAST/EiJ m 3.32 0.157   14 0.0419 0.0472 3.09, 3.58 -0.31
DBA/2J m 3.3 0.0965   39 0.0154 0.0293 3.06, 3.53 -0.4
FVB/NJ m 3.36 0.167   36 0.0278 0.0496 3.04, 3.65 -0.13
NOD/ShiLtJ m 3.69 0.163   37 0.0268 0.0441 3.22, 3.98 1.4
PWK/PhJ m 3.34 0.132   15 0.0341 0.0395 3.06, 3.52 -0.22
WSB/EiJ m 3.36 0.113   14 0.0302 0.0337 3.11, 3.52 -0.13


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 3.1586 0.016 3.19 3.1271
A/J m 3.53 0.0187 3.5668 3.4932
BALB/cByJ m 3.7516 0.0185 3.788 3.7152
C3H/HeJ m 2.9999 0.0228 3.0447 2.955
C57BL/6J m 3.4519 0.0119 3.4752 3.4286
CAST/EiJ m 3.3226 0.0328 3.3871 3.258
DBA/2J m 3.2951 0.0197 3.3337 3.2564
FVB/NJ m 3.3616 0.0205 3.4019 3.3214
NOD/ShiLtJ m 3.6934 0.0202 3.7331 3.6537
PWK/PhJ m 3.3382 0.0317 3.4005 3.2759
WSB/EiJ m 3.3581 0.0328 3.4226 3.2935




  GWAS USING LINEAR MIXED MODELS