Project measure / variable:   Loos2   onshelter_response_DK

ID, description, units MPD:54038   onshelter_response_DK   change in OnShelter zone duration: response to phase onset, over 3 days of testing    during dark phase  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
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  STRAIN COMPARISON PLOT
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Loos2 - change in OnShelter zone duration: response to phase onset, over 3 days of testing during dark phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means0.0475   None
Median of the strain means0.0438   None
SD of the strain means± 0.0576
Coefficient of variation (CV)1.21
Min–max range of strain means-0.0268   –   0.140   None
Mean sample size per strain31.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 1.3326 0.1333 14.7778 < 0.0001
Residuals 388 3.4989 0.009


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.0515 0.0926   54 0.0126 1.8 -0.055, 0.394 0.07
A/J m 0.0649 0.12   22 0.0256 1.85 -0.178, 0.489 0.3
BALB/cByJ m 0.14 0.101   44 0.0152 0.72 -0.0324, 0.38 1.61
C3H/HeJ m -0.00785 0.042   28 0.00794 -5.35 -0.111, 0.0492 -0.96
C57BL/6J m 0.14 0.092   106 0.00894 0.656 -0.203, 0.475 1.61
CAST/EiJ m -0.0017 0.0382   14 0.0102 -22.5 -0.0488, 0.0983 -0.85
DBA/2J m 0.0946 0.169   31 0.0304 1.79 -0.486, 0.525 0.82
FVB/NJ m 0.0438 0.096   36 0.016 2.19 -0.146, 0.419 -0.06
NOD/ShiLtJ m 0.0143 0.0286   37 0.0047 2.0 -0.0416, 0.104 -0.58
PWK/PhJ m -0.0268 0.0873   15 0.0225 -3.26 -0.181, 0.12 -1.29
WSB/EiJ m 0.00995 0.0526   12 0.0152 5.28 -0.084, 0.108 -0.65


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.0515 0.0129 0.0769 0.0261
A/J m 0.0649 0.0202 0.1047 0.0251
BALB/cByJ m 0.1398 0.0143 0.168 0.1117
C3H/HeJ m -0.0079 0.0179 0.0274 -0.0431
C57BL/6J m 0.1403 0.0092 0.1584 0.1221
CAST/EiJ m -0.0017 0.0254 0.0482 -0.0516
DBA/2J m 0.0946 0.0171 0.1281 0.061
FVB/NJ m 0.0438 0.0158 0.0749 0.0127
NOD/ShiLtJ m 0.0143 0.0156 0.045 -0.0164
PWK/PhJ m -0.0268 0.0245 0.0214 -0.075
WSB/EiJ m 0.01 0.0274 0.0639 -0.0439




  GWAS USING LINEAR MIXED MODELS