Project measure / variable:   Loos2   activity_response_LT

ID, description, units MPD:54025   activity_response_LT   change in activity proportion: response to phase onset, over 3 days of testing    during light phase  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
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  STRAIN COMPARISON PLOT
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Loos2 - change in activity proportion: response to phase onset, over 3 days of testing during light phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means-0.0707   None
Median of the strain means-0.0757   None
SD of the strain means± 0.0664
Coefficient of variation (CV)-0.940
Min–max range of strain means-0.188   –   0.0619   None
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 1.5803 0.158 10.9156 < 0.0001
Residuals 426 6.1674 0.0145


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m -0.0757 0.121   59 0.0157 -1.6 -0.531, 0.259 -0.08
A/J m -0.116 0.0916   43 0.014 -0.787 -0.318, 0.232 -0.68
BALB/cByJ m -0.188 0.126   44 0.019 -0.671 -0.495, 0.0438 -1.77
C3H/HeJ m 0.00526 0.0461   29 0.00856 8.76 -0.0565, 0.149 1.14
C57BL/6J m -0.0654 0.102   107 0.00986 -1.56 -0.214, 0.546 0.08
CAST/EiJ m -0.0305 0.0716   14 0.0191 -2.34 -0.152, 0.129 0.61
DBA/2J m -0.0931 0.205   39 0.0328 -2.2 -0.594, 0.944 -0.34
FVB/NJ m 0.0619 0.107   36 0.0179 1.73 -0.174, 0.362 2.0
NOD/ShiLtJ m -0.0612 0.0758   37 0.0125 -1.24 -0.183, 0.103 0.14
PWK/PhJ m -0.107 0.242   15 0.0624 -2.26 -0.267, 0.739 -0.55
WSB/EiJ m -0.108 0.0466   14 0.0124 -0.431 -0.199, -0.0459 -0.56


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m -0.0757 0.0157 -0.0449 -0.1065
A/J m -0.1164 0.0183 -0.0803 -0.1524
BALB/cByJ m -0.1877 0.0181 -0.1521 -0.2234
C3H/HeJ m 0.0053 0.0223 0.0492 -0.0387
C57BL/6J m -0.0654 0.0116 -0.0425 -0.0883
CAST/EiJ m -0.0305 0.0322 0.0327 -0.0937
DBA/2J m -0.0931 0.0193 -0.0553 -0.131
FVB/NJ m 0.0619 0.0201 0.1013 0.0225
NOD/ShiLtJ m -0.0612 0.0198 -0.0223 -0.1
PWK/PhJ m -0.1071 0.0311 -0.0461 -0.1682
WSB/EiJ m -0.1081 0.0322 -0.0449 -0.1713




  GWAS USING LINEAR MIXED MODELS