Project measure / variable:   Loos2   activity_response_DK

ID, description, units MPD:54024   activity_response_DK   change in activity proportion: response to phase onset, over 3 days of testing    during dark phase  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
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  STRAIN COMPARISON PLOT
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Loos2 - change in activity proportion: response to phase onset, over 3 days of testing during dark phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means0.223   None
Median of the strain means0.272   None
SD of the strain means± 0.0946
Coefficient of variation (CV)0.425
Min–max range of strain means0.0450   –   0.355   None
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 3.4045 0.3405 28.3207 < 0.0001
Residuals 426 5.1211 0.012


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.115 0.0845   59 0.011 0.735 -0.027, 0.492 -1.14
A/J m 0.289 0.0882   43 0.0134 0.305 0.143, 0.435 0.7
BALB/cByJ m 0.355 0.132   44 0.0199 0.372 0.0887, 0.618 1.4
C3H/HeJ m 0.045 0.126   29 0.0233 2.79 -0.549, 0.206 -1.88
C57BL/6J m 0.273 0.106   107 0.0102 0.386 -0.000888, 0.514 0.53
CAST/EiJ m 0.288 0.0726   14 0.0194 0.252 0.184, 0.389 0.69
DBA/2J m 0.138 0.128   39 0.0205 0.929 -0.582, 0.302 -0.89
FVB/NJ m 0.163 0.0989   36 0.0165 0.607 -0.0152, 0.36 -0.63
NOD/ShiLtJ m 0.221 0.145   37 0.0239 0.658 -0.0352, 0.512 -0.02
PWK/PhJ m 0.272 0.0637   15 0.0164 0.234 0.192, 0.388 0.52
WSB/EiJ m 0.29 0.108   14 0.0288 0.372 0.117, 0.551 0.71


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.1149 0.0143 0.143 0.0868
A/J m 0.2894 0.0167 0.3222 0.2565
BALB/cByJ m 0.3552 0.0165 0.3876 0.3227
C3H/HeJ m 0.045 0.0204 0.0851 0.005
C57BL/6J m 0.2731 0.0106 0.2939 0.2523
CAST/EiJ m 0.2881 0.0293 0.3457 0.2305
DBA/2J m 0.138 0.0176 0.1725 0.1034
FVB/NJ m 0.1629 0.0183 0.1988 0.127
NOD/ShiLtJ m 0.2211 0.018 0.2565 0.1856
PWK/PhJ m 0.2721 0.0283 0.3278 0.2165
WSB/EiJ m 0.2902 0.0293 0.3478 0.2326




  GWAS USING LINEAR MIXED MODELS