Phenotype measure:   Loos2   activity_anticipation_LT

ID, description, units MPD:54023   activity_anticipation_LT   change in activity proportion: anticipation of phase change, over 3 days of testing    during light phase
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
Ontology mappings

  STRAIN COMPARISON PLOT
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Loos2 - change in activity proportion: anticipation of phase change, over 3 days of testing during light phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means0.00531   None
Median of the strain means0.0115   None
SD of the strain means± 0.0568
Coefficient of variation (CV)10.7
Min–max range of strain means-0.0899   –   0.107   None
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 1.7291 0.1729 14.2188 < 0.0001
Residuals 426 5.1806 0.0122


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.00696 0.127   59 0.0165 18.3 -0.495, 0.369 0.03
A/J m 0.0446 0.115   43 0.0175 2.58 -0.318, 0.265 0.69
BALB/cByJ m -0.0899 0.142   44 0.0214 -1.58 -0.461, 0.236 -1.68
C3H/HeJ m 0.0115 0.0621   29 0.0115 5.42 -0.0721, 0.139 0.11
C57BL/6J m 0.107 0.0953   107 0.00921 0.887 -0.128, 0.344 1.79
CAST/EiJ m 0.0674 0.12   14 0.0321 1.78 -0.116, 0.258 1.09
DBA/2J m 0.0117 0.119   39 0.0191 10.2 -0.45, 0.271 0.11
FVB/NJ m -0.0593 0.0819   36 0.0136 -1.38 -0.415, 0.0352 -1.14
NOD/ShiLtJ m 0.0208 0.128   37 0.0211 6.18 -0.225, 0.449 0.27
PWK/PhJ m -0.0439 0.0937   15 0.0242 -2.13 -0.259, 0.123 -0.87
WSB/EiJ m -0.0185 0.0754   14 0.0202 -4.08 -0.131, 0.155 -0.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.007 0.0144 0.0352 -0.0213
A/J m 0.0446 0.0168 0.0776 0.0115
BALB/cByJ m -0.0899 0.0166 -0.0573 -0.1226
C3H/HeJ m 0.0115 0.0205 0.0517 -0.0288
C57BL/6J m 0.1074 0.0107 0.1283 0.0864
CAST/EiJ m 0.0674 0.0295 0.1253 0.0095
DBA/2J m 0.0117 0.0177 0.0464 -0.023
FVB/NJ m -0.0593 0.0184 -0.0232 -0.0955
NOD/ShiLtJ m 0.0208 0.0181 0.0564 -0.0149
PWK/PhJ m -0.0439 0.0285 0.012 -0.0999
WSB/EiJ m -0.0185 0.0295 0.0394 -0.0764




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.