Phenotype measure:   Loos2   activity_anticipation_DK

ID, description, units MPD:54022   activity_anticipation_DK   change in activity proportion: anticipation of phase change, over 3 days of testing    during dark phase
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
Ontology mappings

  STRAIN COMPARISON PLOT
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Loos2 - change in activity proportion: anticipation of phase change, over 3 days of testing during dark phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means0.0294   None
Median of the strain means0.0234   None
SD of the strain means± 0.0425
Coefficient of variation (CV)1.45
Min–max range of strain means-0.0194   –   0.127   None
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 0.4394 0.0439 8.3141 < 0.0001
Residuals 426 2.2517 0.0053


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.00507 0.0348   59 0.00453 6.86 -0.0597, 0.156 -0.57
A/J m 0.0376 0.0915   43 0.014 2.43 -0.0199, 0.577 0.19
BALB/cByJ m 0.00469 0.0397   44 0.00598 8.47 -0.106, 0.105 -0.58
C3H/HeJ m -0.0122 0.115   29 0.0214 -9.41 -0.593, 0.0703 -0.98
C57BL/6J m 0.00891 0.0281   107 0.00271 3.15 -0.0569, 0.0974 -0.48
CAST/EiJ m 0.127 0.0413   14 0.011 0.324 0.0773, 0.22 2.29
DBA/2J m -0.0194 0.134   39 0.0214 -6.89 -0.825, 0.0514 -1.15
FVB/NJ m 0.0801 0.103   36 0.0172 1.29 -0.0789, 0.343 1.19
NOD/ShiLtJ m 0.0234 0.0663   37 0.0109 2.84 -0.073, 0.246 -0.14
PWK/PhJ m 0.0267 0.0347   15 0.00896 1.3 -0.042, 0.0748 -0.06
WSB/EiJ m 0.0418 0.0681   14 0.0182 1.63 -0.0873, 0.201 0.29


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.0051 0.0095 0.0237 -0.0135
A/J m 0.0376 0.0111 0.0594 0.0158
BALB/cByJ m 0.0047 0.011 0.0262 -0.0169
C3H/HeJ m -0.0122 0.0135 0.0143 -0.0388
C57BL/6J m 0.0089 0.007 0.0227 -0.0049
CAST/EiJ m 0.1273 0.0194 0.1655 0.0891
DBA/2J m -0.0194 0.0116 0.0035 -0.0423
FVB/NJ m 0.0801 0.0121 0.1039 0.0563
NOD/ShiLtJ m 0.0234 0.012 0.0469 -0.0001
PWK/PhJ m 0.0267 0.0188 0.0636 -0.0102
WSB/EiJ m 0.0418 0.0194 0.08 0.0036




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.