Project measure / variable:   Loos2   onshelter_dur_LT

ID, description, units MPD:54021   onshelter_dur_LT   cumulative duration in OnShelter zone, over 3 days of testing, log10 transformed   [log(s)]  during light phase  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
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  STRAIN COMPARISON PLOT
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Loos2 - cumulative duration in OnShelter zone, over 3 days of testing, log10 transformed during light phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means1.77   log(s)
Median of the strain means1.86   log(s)
SD of the strain means± 0.810
Coefficient of variation (CV)0.458
Min–max range of strain means0.317   –   2.82   log(s)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 269.7476 26.9748 55.9225 < 0.0001
Residuals 426 205.4854 0.4824


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.317 0.747   59 0.0972 2.35 -1.79
A/J m 0.496 0.927   43 0.141 1.87 -1.57
BALB/cByJ m 1.79 0.811   44 0.122 0.454 0.03
C3H/HeJ m 1.68 0.998   29 0.185 0.593 -0.11
C57BL/6J m 2.14 0.402   107 0.0388 0.188 1.09, 3.05 0.46
CAST/EiJ m 2.81 0.255   14 0.0682 0.0908 2.42, 3.28 1.29
DBA/2J m 1.3 0.937   39 0.15 0.722 -0.58
FVB/NJ m 2.82 0.244   36 0.0406 0.0865 2.4, 3.46 1.3
NOD/ShiLtJ m 1.86 0.747   37 0.123 0.402 0.11
PWK/PhJ m 2.2 0.224   15 0.0579 0.102 1.77, 2.53 0.53
WSB/EiJ m 2.05 0.716   14 0.191 0.35 0.35


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.3175 0.0904 0.4952 0.1397
A/J m 0.4956 0.1059 0.7038 0.2874
BALB/cByJ m 1.7859 0.1047 1.9917 1.5801
C3H/HeJ m 1.6827 0.129 1.9362 1.4292
C57BL/6J m 2.1401 0.0671 2.2721 2.0081
CAST/EiJ m 2.8131 0.1856 3.1779 2.4482
DBA/2J m 1.2982 0.1112 1.5168 1.0796
FVB/NJ m 2.8169 0.1158 3.0444 2.5894
NOD/ShiLtJ m 1.8587 0.1142 2.0831 1.6343
PWK/PhJ m 2.2004 0.1793 2.5529 1.8479
WSB/EiJ m 2.0476 0.1856 2.4124 1.6827




  GWAS USING LINEAR MIXED MODELS