Phenotype measure:   Loos2   onshelter_dur_DK

ID, description, units MPD:54018   onshelter_dur_DK   cumulative duration in OnShelter zone, over 3 days of testing, log10 transformed   [log(s)]  during dark phase
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
Ontology mappings

  STRAIN COMPARISON PLOT
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Loos2 - cumulative duration in OnShelter zone, over 3 days of testing, log10 transformed during dark phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means2.77   log(s)
Median of the strain means3.07   log(s)
SD of the strain means± 0.705
Coefficient of variation (CV)0.255
Min–max range of strain means1.25   –   3.45   log(s)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 269.4285 26.9428 45.2409 < 0.0001
Residuals 426 253.701 0.5955


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.25 1.46   59 0.19 1.17 -2.15
A/J m 1.71 1.57   43 0.239 0.913 -1.5
BALB/cByJ m 3.45 0.247   44 0.0372 0.0714 2.87, 3.95 0.97
C3H/HeJ m 2.57 0.34   29 0.0632 0.133 1.39, 3.14 -0.28
C57BL/6J m 3.43 0.18   107 0.0174 0.0526 3.08, 3.97 0.94
CAST/EiJ m 3.07 0.302   14 0.0806 0.0981 2.69, 3.69 0.43
DBA/2J m 3.26 0.262   39 0.0419 0.0803 2.57, 3.88 0.7
FVB/NJ m 3.08 0.32   36 0.0533 0.104 2.58, 4.11 0.44
NOD/ShiLtJ m 2.59 0.493   37 0.0811 0.19 0.103, 3.23 -0.25
PWK/PhJ m 3.1 0.151   15 0.039 0.0487 2.89, 3.48 0.47
WSB/EiJ m 2.94 0.284   14 0.0759 0.0965 2.33, 3.44 0.24


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.2533 0.1005 1.4508 1.0558
A/J m 1.714 0.1177 1.9453 1.4826
BALB/cByJ m 3.4536 0.1163 3.6823 3.2249
C3H/HeJ m 2.5671 0.1433 2.8487 2.2854
C57BL/6J m 3.4305 0.0746 3.5772 3.2839
CAST/EiJ m 3.0745 0.2062 3.4799 2.6691
DBA/2J m 3.2589 0.1236 3.5018 3.0161
FVB/NJ m 3.0805 0.1286 3.3333 2.8277
NOD/ShiLtJ m 2.5928 0.1269 2.8421 2.3434
PWK/PhJ m 3.1044 0.1993 3.496 2.7128
WSB/EiJ m 2.9449 0.2062 3.3502 2.5395




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.