Project measure / variable:   Loos2   onshelter_num_LT

ID, description, units MPD:54017   onshelter_num_LT   cumulative number of visits to OnShelter zone, over 3 days of testing, log10 transformed   [log(n)]  during light phase  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
Ontology mappings

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  STRAIN COMPARISON PLOT
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Loos2 - cumulative number of visits to OnShelter zone, over 3 days of testing, log10 transformed during light phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means0.796   log(n)
Median of the strain means0.879   log(n)
SD of the strain means± 0.495
Coefficient of variation (CV)0.621
Min–max range of strain means0.115   –   1.59   log(n)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 90.1077 9.0108 70.7424 < 0.0001
Residuals 426 54.2615 0.1274


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.115 0.291   59 0.0379 2.53 -1.38
A/J m 0.146 0.311   43 0.0475 2.13 -1.31
BALB/cByJ m 0.759 0.451   44 0.068 0.595 -0.08
C3H/HeJ m 0.44 0.334   29 0.062 0.758 -0.72
C57BL/6J m 1.0 0.344   107 0.0333 0.343 0.301, 1.8 0.41
CAST/EiJ m 1.5 0.188   14 0.0502 0.125 1.13, 1.77 1.42
DBA/2J m 0.371 0.345   39 0.0553 0.93 -0.86
FVB/NJ m 1.59 0.271   36 0.0451 0.171 1.02, 2.25 1.6
NOD/ShiLtJ m 0.909 0.489   37 0.0804 0.538 0.23
PWK/PhJ m 0.879 0.219   15 0.0566 0.25 0.505, 1.25 0.17
WSB/EiJ m 1.05 0.555   14 0.148 0.53 0.51


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.1154 0.0465 0.2067 0.0241
A/J m 0.146 0.0544 0.253 0.039
BALB/cByJ m 0.7587 0.0538 0.8644 0.6529
C3H/HeJ m 0.4399 0.0663 0.5701 0.3096
C57BL/6J m 1.0041 0.0345 1.0719 0.9363
CAST/EiJ m 1.5011 0.0954 1.6886 1.3136
DBA/2J m 0.3713 0.0571 0.4836 0.259
FVB/NJ m 1.586 0.0595 1.7029 1.4691
NOD/ShiLtJ m 0.9092 0.0587 1.0245 0.7939
PWK/PhJ m 0.8785 0.0922 1.0596 0.6974
WSB/EiJ m 1.0471 0.0954 1.2345 0.8596




  GWAS USING LINEAR MIXED MODELS