Project measure / variable:   Loos2   onshelter_num_DK

ID, description, units MPD:54016   onshelter_num_DK   cumulative number of visits to OnShelter zone, over 3 days of testing, log10 transformed   [log(n)]  during dark phase  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
Ontology mappings

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  STRAIN COMPARISON PLOT
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Loos2 - cumulative number of visits to OnShelter zone, over 3 days of testing, log10 transformed during dark phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means1.60   log(n)
Median of the strain means1.76   log(n)
SD of the strain means± 0.565
Coefficient of variation (CV)0.353
Min–max range of strain means0.448   –   2.20   log(n)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 162.1647 16.2165 93.9483 < 0.0001
Residuals 426 73.5321 0.1726


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.448 0.562   59 0.0732 1.25 -2.04
A/J m 1.09 0.904   43 0.138 0.828 -0.9
BALB/cByJ m 2.2 0.193   44 0.0291 0.0876 1.64, 2.5 1.06
C3H/HeJ m 0.869 0.342   29 0.0636 0.394 0.301, 1.47 -1.3
C57BL/6J m 2.17 0.178   107 0.0173 0.0821 1.88, 2.65 1.01
CAST/EiJ m 1.93 0.316   14 0.0845 0.164 1.47, 2.66 0.58
DBA/2J m 1.64 0.254   39 0.0407 0.155 0.623, 2.01 0.07
FVB/NJ m 1.76 0.272   36 0.0454 0.155 1.16, 2.34 0.28
NOD/ShiLtJ m 1.63 0.364   37 0.0599 0.224 0.301, 2.31 0.05
PWK/PhJ m 1.83 0.144   15 0.0372 0.0788 1.59, 2.17 0.41
WSB/EiJ m 2.04 0.309   14 0.0826 0.152 1.55, 2.43 0.78


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.4482 0.0541 0.5545 0.3419
A/J m 1.0912 0.0634 1.2157 0.9666
BALB/cByJ m 2.204 0.0626 2.3271 2.0809
C3H/HeJ m 0.8692 0.0771 1.0209 0.7176
C57BL/6J m 2.1747 0.0402 2.2537 2.0958
CAST/EiJ m 1.9261 0.111 2.1444 1.7079
DBA/2J m 1.6403 0.0665 1.771 1.5095
FVB/NJ m 1.755 0.0692 1.8911 1.6189
NOD/ShiLtJ m 1.6262 0.0683 1.7604 1.4919
PWK/PhJ m 1.8275 0.1073 2.0383 1.6166
WSB/EiJ m 2.0362 0.111 2.2545 1.818




  GWAS USING LINEAR MIXED MODELS