Phenotype measure:   Loos2   activity_dur_hab_LT

ID, description, units MPD:54008   activity_dur_hab_LT   habituation ratio describing change in cumulative activity duration, over 3 days of testing, log10 transformed   [log(ratio)]  during light phase
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

Loos2 - habituation ratio describing change in cumulative activity duration, over 3 days of testing, log10 transformed during light phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means0.291   log(ratio)
Median of the strain means0.272   log(ratio)
SD of the strain means± 0.0642
Coefficient of variation (CV)0.220
Min–max range of strain means0.199   –   0.442   log(ratio)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 1.0215 0.1021 6.1889 < 0.0001
Residuals 426 7.0313 0.0165


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.295 0.141   59 0.0184 0.48 0.0309, 0.722 0.06
A/J m 0.272 0.161   43 0.0245 0.592 -0.3
BALB/cByJ m 0.199 0.0751   44 0.0113 0.378 0.0808, 0.365 -1.43
C3H/HeJ m 0.312 0.125   29 0.0232 0.402 0.041, 0.733 0.33
C57BL/6J m 0.25 0.0969   107 0.00937 0.388 0.016, 0.671 -0.64
CAST/EiJ m 0.259 0.0459   14 0.0123 0.177 0.171, 0.346 -0.5
DBA/2J m 0.341 0.22   39 0.0352 0.644 0.00969, 1.04 0.78
FVB/NJ m 0.244 0.0432   36 0.00719 0.177 0.169, 0.333 -0.73
NOD/ShiLtJ m 0.265 0.109   37 0.0179 0.41 0.0722, 0.583 -0.41
PWK/PhJ m 0.323 0.146   15 0.0378 0.454 0.193, 0.784 0.5
WSB/EiJ m 0.442 0.187   14 0.0501 0.425 0.163, 0.682 2.35


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.295 0.0167 0.3279 0.2621
A/J m 0.2715 0.0196 0.31 0.233
BALB/cByJ m 0.1986 0.0194 0.2366 0.1605
C3H/HeJ m 0.3117 0.0239 0.3585 0.2648
C57BL/6J m 0.2496 0.0124 0.274 0.2252
CAST/EiJ m 0.2589 0.0343 0.3263 0.1914
DBA/2J m 0.3408 0.0206 0.3812 0.3003
FVB/NJ m 0.2441 0.0214 0.2862 0.202
NOD/ShiLtJ m 0.2651 0.0211 0.3066 0.2236
PWK/PhJ m 0.3226 0.0332 0.3878 0.2574
WSB/EiJ m 0.4415 0.0343 0.509 0.374




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.