Project measure / variable:   Loos2   activity_dur_hab_DK

ID, description, units MPD:54007   activity_dur_hab_DK   habituation ratio describing change in cumulative activity duration, over 3 days of testing, log10 transformed   [log(ratio)]  during dark phase  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
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  STRAIN COMPARISON PLOT
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Loos2 - habituation ratio describing change in cumulative activity duration, over 3 days of testing, log10 transformed during dark phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means0.256   log(ratio)
Median of the strain means0.253   log(ratio)
SD of the strain means± 0.0204
Coefficient of variation (CV)0.0797
Min–max range of strain means0.222   –   0.299   log(ratio)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 0.2601 0.026 6.5557 < 0.0001
Residuals 426 1.6905 0.004


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.264 0.0903   59 0.0118 0.342 0.101, 0.552 0.39
A/J m 0.222 0.0319   43 0.00486 0.143 0.156, 0.285 -1.67
BALB/cByJ m 0.253 0.0376   44 0.00567 0.149 0.181, 0.369 -0.15
C3H/HeJ m 0.247 0.065   29 0.0121 0.263 0.113, 0.417 -0.45
C57BL/6J m 0.299 0.0658   107 0.00636 0.22 0.173, 0.526 2.1
CAST/EiJ m 0.26 0.0428   14 0.0114 0.164 0.179, 0.327 0.19
DBA/2J m 0.251 0.0668   39 0.0107 0.266 0.124, 0.476 -0.25
FVB/NJ m 0.236 0.0536   36 0.00894 0.228 0.138, 0.417 -0.98
NOD/ShiLtJ m 0.256 0.0539   37 0.00886 0.211 0.145, 0.38 0.0
PWK/PhJ m 0.25 0.0509   15 0.0131 0.203 0.184, 0.358 -0.3
WSB/EiJ m 0.279 0.0888   14 0.0237 0.319 0.169, 0.528 1.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.2644 0.0082 0.2805 0.2483
A/J m 0.2223 0.0096 0.2412 0.2034
BALB/cByJ m 0.2531 0.0095 0.2718 0.2345
C3H/HeJ m 0.2469 0.0117 0.2699 0.2239
C57BL/6J m 0.2988 0.0061 0.3107 0.2868
CAST/EiJ m 0.2604 0.0168 0.2935 0.2273
DBA/2J m 0.2508 0.0101 0.2707 0.231
FVB/NJ m 0.2355 0.0105 0.2562 0.2149
NOD/ShiLtJ m 0.2558 0.0104 0.2762 0.2355
PWK/PhJ m 0.2501 0.0163 0.2821 0.2182
WSB/EiJ m 0.2785 0.0168 0.3116 0.2454




  GWAS USING LINEAR MIXED MODELS