Phenotype measure:   Loos2   activity_mean_dur_DK

ID, description, units MPD:54005   activity_mean_dur_DK   mean duration per activity bout, over 3 days of testing, log10 transformed   [log(s)]  during dark phase
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

Loos2 - mean duration per activity bout, over 3 days of testing, log10 transformed during dark phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means1.41   log(s)
Median of the strain means1.42   log(s)
SD of the strain means± 0.0564
Coefficient of variation (CV)0.0399
Min–max range of strain means1.32   –   1.52   log(s)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 1.2117 0.1212 14.7497 < 0.0001
Residuals 426 3.4996 0.0082


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.32 0.136   59 0.0177 0.103 1.0, 1.7 -1.63
A/J m 1.36 0.0741   43 0.0113 0.0543 1.21, 1.5 -0.92
BALB/cByJ m 1.36 0.0922   44 0.0139 0.0678 1.2, 1.59 -0.92
C3H/HeJ m 1.42 0.0774   29 0.0144 0.0543 1.3, 1.6 0.15
C57BL/6J m 1.42 0.0638   107 0.00616 0.0449 1.24, 1.56 0.15
CAST/EiJ m 1.41 0.0963   14 0.0257 0.0683 1.3, 1.64 -0.03
DBA/2J m 1.45 0.107   39 0.0171 0.0738 1.21, 1.7 0.68
FVB/NJ m 1.52 0.0841   36 0.014 0.0554 1.36, 1.69 1.92
NOD/ShiLtJ m 1.45 0.0798   37 0.0131 0.0552 1.3, 1.63 0.68
PWK/PhJ m 1.45 0.0865   15 0.0223 0.0596 1.32, 1.6 0.68
WSB/EiJ m 1.37 0.084   14 0.0224 0.0614 1.22, 1.51 -0.74


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.3239 0.0118 1.3471 1.3007
A/J m 1.363 0.0138 1.3901 1.3358
BALB/cByJ m 1.3596 0.0137 1.3865 1.3328
C3H/HeJ m 1.4235 0.0168 1.4566 1.3904
C57BL/6J m 1.4187 0.0088 1.4359 1.4015
CAST/EiJ m 1.4087 0.0242 1.4563 1.3611
DBA/2J m 1.4463 0.0145 1.4748 1.4177
FVB/NJ m 1.5167 0.0151 1.5464 1.487
NOD/ShiLtJ m 1.4458 0.0149 1.4751 1.4165
PWK/PhJ m 1.4511 0.0234 1.4971 1.4051
WSB/EiJ m 1.3674 0.0242 1.415 1.3197




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.