Phenotype measure:   Loos2   activity_num_LT

ID, description, units MPD:54002   activity_num_LT   cumulative number of activity bouts, over 3 days of testing, log10 transformed   [log(n)]  during light phase
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
Ontology mappings

  STRAIN COMPARISON PLOT
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Loos2 - cumulative number of activity bouts, over 3 days of testing, log10 transformed during light phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means1.77   log(n)
Median of the strain means1.78   log(n)
SD of the strain means± 0.262
Coefficient of variation (CV)0.149
Min–max range of strain means1.25   –   2.22   log(n)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 21.5465 2.1546 40.043 < 0.0001
Residuals 426 22.9224 0.0538


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 1.66 0.279   59 0.0363 0.169 1.04, 2.46 -0.41
A/J m 1.51 0.331   43 0.0505 0.22 0.131, 2.03 -0.98
BALB/cByJ m 1.91 0.209   44 0.0315 0.11 1.58, 2.42 0.54
C3H/HeJ m 1.64 0.129   29 0.024 0.0788 1.38, 1.86 -0.48
C57BL/6J m 1.78 0.173   107 0.0167 0.0971 1.37, 2.23 0.05
CAST/EiJ m 2.22 0.0888   14 0.0237 0.0401 2.07, 2.37 1.72
DBA/2J m 1.25 0.302   39 0.0484 0.243 0.477, 1.96 -1.97
FVB/NJ m 2.07 0.153   36 0.0255 0.0739 1.71, 2.48 1.15
NOD/ShiLtJ m 1.86 0.222   37 0.0365 0.12 1.44, 2.34 0.35
PWK/PhJ m 1.74 0.183   15 0.0473 0.106 1.49, 2.06 -0.1
WSB/EiJ m 1.8 0.356   14 0.0952 0.198 0.982, 2.54 0.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 1.6561 0.0302 1.7154 1.5967
A/J m 1.5065 0.0354 1.576 1.437
BALB/cByJ m 1.905 0.035 1.9738 1.8363
C3H/HeJ m 1.6421 0.0431 1.7267 1.5574
C57BL/6J m 1.7818 0.0224 1.8259 1.7377
CAST/EiJ m 2.2156 0.062 2.3374 2.0937
DBA/2J m 1.2457 0.0371 1.3187 1.1727
FVB/NJ m 2.0686 0.0387 2.1446 1.9926
NOD/ShiLtJ m 1.856 0.0381 1.931 1.781
PWK/PhJ m 1.7366 0.0599 1.8543 1.6189
WSB/EiJ m 1.8 0.062 1.9219 1.6782




  GENOME-WIDE ASSOCIATION (GWAS) STATIC PLOT
Plot generated with EMMA / pyLMM using 132K SNP array. Click on plot to view at larger size.