Project measure / variable:   Loos2   activity_num_DK

ID, description, units MPD:54001   activity_num_DK   cumulative number of activity bouts, over 3 days of testing, log10 transformed   [log(n)]  during dark phase  
Data set, strains Loos2   inbred w/CC7   11 strains     sex: m     age: 8-12wks
Procedure home cage monitoring
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  STRAIN COMPARISON PLOT
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Loos2 - cumulative number of activity bouts, over 3 days of testing, log10 transformed during dark phase



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested11 strains
Mean of the strain means2.47   log(n)
Median of the strain means2.51   log(n)
SD of the strain means± 0.177
Coefficient of variation (CV)0.0719
Min–max range of strain means2.09   –   2.72   log(n)
Mean sample size per strain35.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 10 10.9394 1.0939 85.4985 < 0.0001
Residuals 426 5.4506 0.0128


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 2.36 0.133   59 0.0173 0.0566 1.95, 2.63 -0.61
A/J m 2.61 0.113   43 0.0172 0.0431 2.36, 2.81 0.8
BALB/cByJ m 2.72 0.112   44 0.0169 0.0412 2.52, 2.99 1.42
C3H/HeJ m 2.09 0.107   29 0.0198 0.0512 1.84, 2.26 -2.13
C57BL/6J m 2.51 0.0947   107 0.00916 0.0377 2.27, 2.78 0.24
CAST/EiJ m 2.54 0.11   14 0.0295 0.0435 2.39, 2.68 0.4
DBA/2J m 2.38 0.0852   39 0.0136 0.0358 2.19, 2.55 -0.5
FVB/NJ m 2.28 0.152   36 0.0253 0.0665 1.98, 2.65 -1.06
NOD/ShiLtJ m 2.5 0.122   37 0.0201 0.0488 2.17, 2.71 0.18
PWK/PhJ m 2.57 0.101   15 0.0261 0.0393 2.38, 2.78 0.57
WSB/EiJ m 2.59 0.11   14 0.0294 0.0425 2.43, 2.77 0.69


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 2.355 0.0147 2.384 2.3261
A/J m 2.609 0.0172 2.6429 2.575
BALB/cByJ m 2.7225 0.0171 2.7561 2.689
C3H/HeJ m 2.0863 0.021 2.1276 2.045
C57BL/6J m 2.5135 0.0109 2.535 2.492
CAST/EiJ m 2.5359 0.0302 2.5953 2.4765
DBA/2J m 2.3786 0.0181 2.4142 2.343
FVB/NJ m 2.2826 0.0189 2.3197 2.2456
NOD/ShiLtJ m 2.5039 0.0186 2.5404 2.4673
PWK/PhJ m 2.5721 0.0292 2.6295 2.5147
WSB/EiJ m 2.5905 0.0302 2.6499 2.5311




  GWAS USING LINEAR MIXED MODELS