Project measure / variable:   Odet2   sperm_LIN_10

ID, description, units MPD:53894   sperm_LIN_10   sperm mean linearity   [ratio]  at 10 min  
Data set, strains Odet2   inbred w/CC8   8 strains     sex: m     age: 10-66wks
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  STRAIN COMPARISON PLOT
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Odet2 - sperm mean linearity at 10 min



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested8 strains
Mean of the strain means40.4   ratio
Median of the strain means39.5   ratio
SD of the strain means± 4.06
Coefficient of variation (CV)0.100
Min–max range of strain means36.8   –   49.7   ratio
Mean sample size per strain14.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 7 1912.137 273.1624 6.4408 < 0.0001
Residuals 108 4580.4148 42.4112


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 37.5 8.14   17 1.97 0.217 23.0, 50.0 -0.72
A/J m 40.1 8.72   17 2.12 0.217 26.0, 50.0 -0.08
C57BL/6J m 38.5 4.74   11 1.43 0.123 33.0, 47.0 -0.47
CAST/EiJ m 36.8 3.41   12 0.986 0.0929 31.0, 42.0 -0.89
NOD/ShiLtJ m 39.0 5.48   10 1.73 0.14 34.0, 53.0 -0.35
NZO/HlLtJ m 41.7 3.77   16 0.943 0.0905 34.0, 46.0 0.32
PWK/PhJ m 40.0 2.78   15 0.717 0.0694 37.0, 46.0 -0.1
WSB/EiJ m 49.7 8.94   18 2.11 0.18 24.0, 66.0 2.29


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 37.5294 1.5795 40.6602 34.3986
A/J m 40.1176 1.5795 43.2485 36.9868
C57BL/6J m 38.5455 1.9636 42.4376 34.6533
CAST/EiJ m 36.75 1.88 40.4764 33.0236
NOD/ShiLtJ m 39.0 2.0594 43.0821 34.9179
NZO/HlLtJ m 41.6875 1.6281 44.9147 38.4603
PWK/PhJ m 40.0 1.6815 43.333 36.667
WSB/EiJ m 49.6667 1.535 52.7093 46.6241




  GWAS USING LINEAR MIXED MODELS