Project measure / variable:   Nadeau2   liver_TG

ID, description, units MPD:53052   liver_TG   liver triglycerides (mg/g liver)    
high-fat high-sucrose diet study
Data set, strains Nadeau2   B6.A consomic w/par   24 strains     sex: m     age: 21wks
Procedure lipid profile
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  STRAIN COMPARISON PLOT
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Nadeau2 - liver triglycerides (mg/g liver)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested24 strains
Mean of the strain means150   None
Median of the strain means132   None
SD of the strain means± 47.1
Coefficient of variation (CV)0.314
Min–max range of strain means66.1   –   248   None
Mean sample size per strain39.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 23 2551471.7695 110933.5552 37.3191 < 0.0001
Residuals 954 2835832.7418 2972.571


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J m 66.1 19.7   95 2.02 0.298 29.0, 114.0 -1.78
B6.A-Chr1 m 189.0 57.3   27 11.0 0.304 73.0, 286.0 0.83
B6.A-Chr10 m 122.0 25.4   76 2.91 0.208 61.0, 184.0 -0.59
B6.A-Chr11 m 137.0 59.2   36 9.86 0.431 36.0, 249.0 -0.27
B6.A-Chr12 m 152.0 42.9   35 7.24 0.282 88.0, 277.0 0.05
B6.A-Chr13 m 121.0 49.3   27 9.49 0.408 38.0, 265.0 -0.61
B6.A-Chr14 m 117.0 29.1   34 4.99 0.249 70.0, 206.0 -0.7
B6.A-Chr15 m 98.6 24.9   27 4.8 0.253 57.0, 149.0 -1.09
B6.A-Chr16 m 116.0 28.5   37 4.69 0.245 66.0, 175.0 -0.72
B6.A-Chr17 m 124.0 20.2   36 3.37 0.163 90.0, 175.0 -0.55
B6.A-Chr18 m 248.0 86.0   38 13.9 0.347 109.0, 436.0 2.09
B6.A-Chr19 m 158.0 53.3   34 9.15 0.337 102.0, 292.0 0.18
B6.A-Chr2 m 194.0 75.1   34 12.9 0.387 114.0, 361.0 0.94
B6.A-Chr3 m 122.0 58.0   40 9.17 0.476 30.0, 247.0 -0.59
B6.A-Chr4 m 182.0 46.3   38 7.51 0.254 80.0, 275.0 0.69
B6.A-Chr5 m 142.0 55.2   38 8.96 0.39 54.0, 253.0 -0.16
B6.A-Chr6 m 128.0 38.8   38 6.3 0.304 59.0, 241.0 -0.46
B6.A-Chr7 m 120.0 46.6   34 7.99 0.389 31.0, 189.0 -0.63
B6.A-Chr8 m 113.0 18.5   34 3.17 0.163 57.0, 152.0 -0.78
B6.A-Chr9 m 234.0 93.2   33 16.2 0.398 102.0, 449.0 1.79
B6.A-ChrX m 223.0 78.0   36 13.0 0.35 110.0, 344.0 1.56
B6.A-ChrY m 138.0 49.2   31 8.84 0.358 31.0, 256.0 -0.25
B6.A-mt m 124.0 21.3   24 4.35 0.172 70.0, 181.0 -0.55
C57BL/6J m 225.0 88.3   96 9.01 0.393 49.0, 418.0 1.6


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 66.1053 5.5938 77.0828 55.1278
B6.A-Chr1 m 188.5185 10.4926 209.1098 167.9272
B6.A-Chr10 m 122.1053 6.254 134.3785 109.832
B6.A-Chr11 m 137.4722 9.0869 155.3048 119.6396
B6.A-Chr12 m 152.1143 9.2158 170.1998 134.0287
B6.A-Chr13 m 120.7778 10.4926 141.3691 100.1865
B6.A-Chr14 m 116.9412 9.3503 135.2908 98.5916
B6.A-Chr15 m 98.5926 10.4926 119.1839 78.0013
B6.A-Chr16 m 116.4595 8.9632 134.0494 98.8695
B6.A-Chr17 m 123.9444 9.0869 141.777 106.1119
B6.A-Chr18 m 247.8421 8.8445 265.1991 230.4851
B6.A-Chr19 m 158.0588 9.3503 176.4084 139.7092
B6.A-Chr2 m 194.1471 9.3503 212.4966 175.7975
B6.A-Chr3 m 121.775 8.6206 138.6925 104.8575
B6.A-Chr4 m 182.2895 8.8445 199.6464 164.9325
B6.A-Chr5 m 141.5526 8.8445 158.9096 124.1957
B6.A-Chr6 m 127.9211 8.8445 145.278 110.5641
B6.A-Chr7 m 119.9706 9.3503 138.3202 101.621
B6.A-Chr8 m 113.4118 9.3503 131.7613 95.0622
B6.A-Chr9 m 234.3333 9.4909 252.9589 215.7078
B6.A-ChrX m 222.7778 9.0869 240.6104 204.9452
B6.A-ChrY m 137.5161 9.7923 156.7331 118.2992
B6.A-mt m 123.7083 11.1291 145.5487 101.868
C57BL/6J m 224.5625 5.5646 235.4827 213.6423




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA