Project measure / variable:   Rusyn6   Ppara_kidney_tce

ID, description, units MPD:51272   Ppara_kidney_tce   Ppara, mRNA in kidney, relative to control group   [ratio]  
trichloroethylene study
Data set, strains Rusyn6   inbred   7 strains     sex: m     age: 6-7wks
Procedure RNA expression profiling
Ontology mappings


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  STRAIN COMPARISON PLOT
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Rusyn6 - Ppara, mRNA in kidney, relative to control group

NOD/ShiLtJC57BL/6JNZW/LacJCAST/EiJA/JBTBR T<+> Itpr3<tf>/J129S1/SvImJ ratio 123456789femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested7 strains
Mean of the strain means1.88   ratio
Median of the strain means1.33   ratio
SD of the strain means± 1.42
Coefficient of variation (CV)0.755
Min–max range of strain means0.833   –   4.93   ratio
Mean sample size per strain3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 6 36.479 6.0798 2.5648 0.0687
Residuals 14 33.1867 2.3705


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129S1/SvImJ m 0.833 0.0577   3 0.0333 0.0693 0.8, 0.9 -0.74
A/J m 1.17 0.404   3 0.233 0.346 0.7, 1.4 -0.5
BTBR T+ Itpr3tf/J m 1.13 0.306   3 0.176 0.27 0.8, 1.4 -0.53
C57BL/6J m 2.33 1.35   3 0.78 0.579 1.0, 3.7 0.31
CAST/EiJ m 1.33 0.208   3 0.12 0.156 1.1, 1.5 -0.39
NOD/ShiLtJ m 4.93 3.8   3 2.19 0.771 1.2, 8.8 2.14
NZW/LacJ m 1.47 0.115   3 0.0667 0.0787 1.4, 1.6 -0.29


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.8333 0.8889 2.7399 0.0
A/J m 1.1667 0.8889 3.0732 0.0
BTBR T+ Itpr3tf/J m 1.1333 0.8889 3.0399 0.0
C57BL/6J m 2.3333 0.8889 4.2399 0.4268
CAST/EiJ m 1.3333 0.8889 3.2399 0.0
NOD/ShiLtJ m 4.9333 0.8889 6.8399 3.0268
NZW/LacJ m 1.4667 0.8889 3.3732 0.0




  GWAS USING LINEAR MIXED MODELS

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