Project measure / variable:   Tarantino2   FST_immobility_trt

ID, description, units MPD:50637   FST_immobility_trt   percentage of time spent immobile, 6 min test   [%]  ovariectomy  
ovariectomy study
Data set, strains Tarantino2   inbred   36 strains     sex: f     age: 10-12wks
Procedure forced swim test
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  STRAIN COMPARISON PLOT
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Tarantino2 - percentage of time spent immobile, 6 min test ovariectomy



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested36 strains
Mean of the strain means17.5   %
Median of the strain means19.5   %
SD of the strain means± 10.7
Coefficient of variation (CV)0.608
Min–max range of strain means0.159   –   39.9   %
Mean sample size per strain8.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 31471.3709 899.182 2.6282 < 0.0001
Residuals 269 92031.3881 342.1241


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 18.6 8.47   9 2.82 0.454 4.74, 29.6 0.1
A/J f 28.8 16.8   8 5.93 0.582 10.4, 53.9 1.06
AKR/J f 39.9 21.1   10 6.69 0.529 7.84, 62.9 2.1
BALB/cByJ f 23.1 18.2   13 5.06 0.79 2.04, 48.6 0.52
BTBR T+ Itpr3tf/J f 8.26 9.9   5 4.43 1.2 1.95, 25.8 -0.87
C3H/HeJ f 16.7 12.8   9 4.28 0.771 3.65, 40.9 -0.08
C57BL/6J f 26.3 13.1   16 3.28 0.498 2.29, 55.4 0.82
C57BR/cdJ f 8.99 4.46   6 1.82 0.496 4.73, 14.2 -0.8
C57L/J f 19.9 14.9   6 6.07 0.748 6.79, 46.2 0.22
CBA/J f 22.8 35.1   14 9.39 1.54 0.49
CZECHII/EiJ f 7.56 6.53   5 2.92 0.863 0.973, 18.1 -0.94
DBA/2J f 10.8 9.56   12 2.76 0.888 0.418, 31.4 -0.63
FVB/NJ f 1.39 1.84   8 0.652 1.32 -1.51
I/LnJ f 22.2 17.4   13 4.82 0.782 1.34, 49.1 0.44
KK/HlJ f 3.27 2.58   7 0.976 0.79 0.556, 7.03 -1.34
LG/J f 10.3 7.28   10 2.3 0.706 1.53, 24.5 -0.68
LP/J f 22.5 14.6   6 5.97 0.649 2.96, 42.4 0.46
MA/MyJ f 2.67 5.27   7 1.99 1.98 0.0927, 14.5 -1.39
MOLF/EiJ f 14.0 29.6   7 11.2 2.11 0.0927, 80.0 -0.33
MRL/MpJ f 25.9 16.3   10 5.16 0.63 2.92, 50.0 0.78
NOD/ShiLtJ f 20.1 24.7   6 10.1 1.23 0.335, 62.5 0.24
NON/ShiLtJ f 26.5 14.8   10 4.67 0.557 11.8, 58.2 0.84
NOR/LtJ f 36.9 38.0   8 13.4 1.03 0.279, 98.2 1.81
NZO/HlLtJ f 22.4 23.3   7 8.82 1.04 2.87, 70.7 0.46
NZW/LacJ f 19.1 21.7   10 6.85 1.13 0.111, 70.6 0.15
PERA/EiJ f 33.1 11.6   8 4.1 0.351 17.8, 46.8 1.46
P/J f 10.9 11.1   8 3.94 1.02 0.649, 30.1 -0.62
PL/J f 20.3 10.1   9 3.38 0.498 3.43, 34.4 0.26
PWD/PhJ f 0.363 0.2   6 0.0815 0.55 0.139, 0.602 -1.61
RIIIS/J f 0.159 0.146   7 0.0553 0.92 -1.63
SEA/GnJ f 37.6 19.4   7 7.34 0.516 14.8, 66.4 1.88
SJL/J f 21.6 18.0   10 5.68 0.833 4.76, 58.1 0.38
SM/J f 11.8 28.4   9 9.46 2.41 -0.54
SWR/J f 4.78 11.0   7 4.15 2.3 0.0371, 29.6 -1.2
WSB/EiJ f 11.1 13.6   6 5.53 1.22 0.649, 36.2 -0.6
ZALENDE/EiJ f 20.8 38.0   6 15.5 1.82 0.788, 98.2 0.31


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 18.6421 6.1655 30.7809 6.5033
A/J f 28.8263 6.5395 41.7014 15.9511
AKR/J f 39.9444 5.8491 51.4603 28.4285
BALB/cByJ f 23.0858 5.13 33.1859 12.9856
BTBR T+ Itpr3tf/J f 8.2644 8.2719 24.5504 0.0
C3H/HeJ f 16.6538 6.1655 28.7926 4.5149
C57BL/6J f 26.3267 4.6241 35.4308 17.2226
C57BR/cdJ f 8.987 7.5512 23.854 0.0
C57L/J f 19.882 7.5512 34.749 5.015
CBA/J f 22.8061 4.9434 32.5389 13.0734
CZECHII/EiJ f 7.5648 8.2719 23.8508 0.0
DBA/2J f 10.7704 5.3395 21.2829 0.2578
FVB/NJ f 1.3911 6.5395 14.2662 0.0
I/LnJ f 22.2311 5.13 32.3312 12.131
KK/HlJ f 3.2665 6.9911 17.0307 0.0
LG/J f 10.3123 5.8491 21.8282 0.0
LP/J f 22.5392 7.5512 37.4061 7.6722
MA/MyJ f 2.666 6.9911 16.4301 0.0
MOLF/EiJ f 14.007 6.9911 27.7711 0.2428
MRL/MpJ f 25.8721 5.8491 37.388 14.3562
NOD/ShiLtJ f 20.1183 7.5512 34.9852 5.2513
NON/ShiLtJ f 26.505 5.8491 38.0209 14.9891
NOR/LtJ f 36.8526 6.5395 49.7278 23.9774
NZO/HlLtJ f 22.4439 6.9911 36.208 8.6797
NZW/LacJ f 19.1453 5.8491 30.6612 7.6294
PERA/EiJ f 33.0975 6.5395 45.9727 20.2223
P/J f 10.9006 6.5395 23.7758 0.0
PL/J f 20.3311 6.1655 32.4699 8.1923
PWD/PhJ f 0.363 7.5512 15.23 0.0
RIIIS/J f 0.1589 6.9911 13.923 0.0
SEA/GnJ f 37.6086 6.9911 51.3727 23.8444
SJL/J f 21.5927 5.8491 33.1086 10.0768
SM/J f 11.7555 6.1655 23.8944 0.0
SWR/J f 4.7764 6.9911 18.5406 0.0
WSB/EiJ f 11.0703 7.5512 25.9373 0.0
ZALENDE/EiJ f 20.8469 7.5512 35.7139 5.9799




  GWAS USING LINEAR MIXED MODELS