Project measure / variable:   Tarantino2   FST_immobility_ctrl

ID, description, units MPD:50636   FST_immobility_ctrl   percentage of time spent immobile, 6 min test   [%]  control  
ovariectomy study
Data set, strains Tarantino2   inbred   36 strains     sex: f     age: 10-12wks
Procedure forced swim test
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  STRAIN COMPARISON PLOT
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Tarantino2 - percentage of time spent immobile, 6 min test control



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested36 strains
Mean of the strain means15.3   %
Median of the strain means14.6   %
SD of the strain means± 9.68
Coefficient of variation (CV)0.631
Min–max range of strain means0.324   –   41.8   %
Mean sample size per strain8.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 29568.2585 844.8074 3.1653 < 0.0001
Residuals 278 74197.0136 266.8957


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 19.9 18.1   10 5.71 0.908 0.809, 68.1 0.47
A/J f 36.3 25.5   11 7.7 0.704 0.92, 77.8 2.17
AKR/J f 41.8 13.8   11 4.16 0.331 16.6, 61.2 2.73
BALB/cByJ f 17.8 12.7   11 3.83 0.711 1.76, 34.3 0.25
BTBR T+ Itpr3tf/J f 9.14 13.6   8 4.81 1.49 0.474, 40.6 -0.64
C3H/HeJ f 10.9 7.14   11 2.15 0.654 1.31, 22.6 -0.46
C57BL/6J f 20.2 14.3   17 3.46 0.707 0.5
C57BR/cdJ f 11.9 5.96   6 2.43 0.501 6.21, 20.6 -0.36
C57L/J f 14.9 15.1   7 5.73 1.01 1.09, 43.8 -0.05
CBA/J f 5.63 5.95   10 1.88 1.06 -1.0
CZECHII/EiJ f 12.5 11.8   4 5.88 0.941 0.371, 25.6 -0.29
DBA/2J f 11.0 15.3   9 5.1 1.38 0.334, 44.7 -0.45
FVB/NJ f 1.86 2.94   8 1.04 1.58 -1.39
I/LnJ f 12.5 11.5   12 3.32 0.919 0.741, 37.6 -0.29
KK/HlJ f 6.8 7.26   5 3.25 1.07 0.371, 17.7 -0.88
LG/J f 7.62 8.92   10 2.82 1.17 1.44, 25.2 -0.8
LP/J f 19.3 13.3   7 5.03 0.689 2.51, 43.3 0.41
MA/MyJ f 3.32 5.61   9 1.87 1.69 0.0463, 14.3 -1.24
MOLF/EiJ f 0.544 0.902   8 0.319 1.66 -1.53
MRL/MpJ f 22.7 17.8   10 5.63 0.783 3.59, 49.3 0.76
NOD/ShiLtJ f 23.1 20.6   6 8.41 0.892 2.17, 58.5 0.8
NON/ShiLtJ f 24.7 27.7   10 8.76 1.12 1.21, 90.0 0.97
NOR/LtJ f 16.6 15.0   10 4.75 0.902 0.0556, 45.4 0.13
NZO/HlLtJ f 16.2 11.4   7 4.32 0.704 6.16, 31.6 0.09
NZW/LacJ f 19.7 29.3   10 9.25 1.49 0.45
PERA/EiJ f 23.9 12.8   8 4.52 0.536 4.96, 43.2 0.88
P/J f 4.64 2.48   8 0.878 0.535 0.51, 8.76 -1.11
PL/J f 21.3 26.5   11 8.0 1.24 4.41, 99.7 0.62
PWD/PhJ f 0.324 0.207   6 0.0846 0.639 0.139, 0.649 -1.55
RIIIS/J f 26.2 40.3   6 16.5 1.54 0.0927, 81.3 1.12
SEA/GnJ f 30.6 14.5   6 5.9 0.473 9.27, 52.0 1.58
SJL/J f 18.0 12.4   10 3.92 0.69 2.31, 36.8 0.27
SM/J f 4.15 5.53   11 1.67 1.33 0.279, 18.0 -1.16
SWR/J f 10.0 27.3   8 9.66 2.73 -0.55
WSB/EiJ f 14.3 11.9   8 4.21 0.832 -0.11
ZALENDE/EiJ f 12.1 11.6   5 5.17 0.957 0.417, 26.0 -0.34


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 19.8979 5.1662 30.0677 9.728
A/J f 36.2921 4.9258 45.9887 26.5956
AKR/J f 41.76 4.9258 51.4566 32.0634
BALB/cByJ f 17.8488 4.9258 27.5454 8.1523
BTBR T+ Itpr3tf/J f 9.1417 5.776 20.512 0.0
C3H/HeJ f 10.9255 4.9258 20.622 1.2289
C57BL/6J f 20.1681 3.9623 27.968 12.3682
C57BR/cdJ f 11.8842 6.6695 25.0134 0.0
C57L/J f 14.9361 6.1748 27.0914 2.7809
CBA/J f 5.6317 5.1662 15.8016 0.0
CZECHII/EiJ f 12.4982 8.1685 28.5781 0.0
DBA/2J f 11.0376 5.4456 21.7576 0.3177
FVB/NJ f 1.8646 5.776 13.2349 0.0
I/LnJ f 12.5025 4.7161 21.7863 3.2188
KK/HlJ f 6.8012 7.3061 21.1835 0.0
LG/J f 7.624 5.1662 17.7938 0.0
LP/J f 19.3274 6.1748 31.4827 7.1722
MA/MyJ f 3.3227 5.4456 14.0426 0.0
MOLF/EiJ f 0.5445 5.776 11.9147 0.0
MRL/MpJ f 22.7432 5.1662 32.913 12.5734
NOD/ShiLtJ f 23.1162 6.6695 36.2454 9.987
NON/ShiLtJ f 24.6845 5.1662 34.8543 14.5147
NOR/LtJ f 16.6429 5.1662 26.8127 6.4731
NZO/HlLtJ f 16.2187 6.1748 28.374 4.0634
NZW/LacJ f 19.6746 5.1662 29.8444 9.5048
PERA/EiJ f 23.8704 5.776 35.2406 12.5002
P/J f 4.6405 5.776 16.0107 0.0
PL/J f 21.3145 4.9258 31.011 11.6179
PWD/PhJ f 0.3244 6.6695 13.4536 0.0
RIIIS/J f 26.2034 6.6695 39.3326 13.0742
SEA/GnJ f 30.6053 6.6695 43.7345 17.4761
SJL/J f 17.9764 5.1662 28.1462 7.8066
SM/J f 4.1519 4.9258 13.8484 0.0
SWR/J f 10.0206 5.776 21.3909 0.0
WSB/EiJ f 14.3074 5.776 25.6776 2.9372
ZALENDE/EiJ f 12.0922 7.3061 26.4745 0.0




  GWAS USING LINEAR MIXED MODELS