Project measure / variable:   Tarantino2   OFT_thigmotaxis_trt

ID, description, units MPD:50632   OFT_thigmotaxis_trt   distance traveled in periphery of arena, 10 min test   [cm]  ovariectomy  
ovariectomy study
Data set, strains Tarantino2   inbred   37 strains     sex: f     age: 10-12wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Tarantino2 - distance traveled in periphery of arena, 10 min test ovariectomy



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested37 strains
Mean of the strain means1674   cm
Median of the strain means1654   cm
SD of the strain means± 628
Coefficient of variation (CV)0.375
Min–max range of strain means377   –   2885   cm
Mean sample size per strain9.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 36 126271098.8163 3507530.5227 15.4466 < 0.0001
Residuals 307 69711801.4162 227074.2717


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 709.0 480.0   9 160.0 0.678 37.0, 1365.0 -1.54
A/J f 377.0 232.0   10 73.3 0.614 101.0, 736.0 -2.07
AKR/J f 2343.0 461.0   10 146.0 0.197 1665.0, 2844.0 1.06
BALB/cByJ f 1366.0 755.0   13 209.0 0.553 115.0, 2344.0 -0.49
BTBR T+ Itpr3tf/J f 2353.0 631.0   9 210.0 0.268 1245.0, 3439.0 1.08
C3H/HeJ f 873.0 147.0   9 49.0 0.168 689.0, 1088.0 -1.28
C57BL/6J f 1749.0 479.0   18 113.0 0.274 527.0, 2568.0 0.12
C57BR/cdJ f 2522.0 429.0   6 175.0 0.17 2100.0, 3230.0 1.35
C57L/J f 1505.0 264.0   7 99.7 0.175 1110.0, 1893.0 -0.27
C58/J f 2885.0 729.0   10 231.0 0.253 1220.0, 3738.0 1.93
CBA/J f 762.0 289.0   14 77.4 0.38 179.0, 1303.0 -1.45
CZECHII/EiJ f 1622.0 422.0   5 189.0 0.26 1257.0, 2200.0 -0.08
DBA/2J f 878.0 605.0   12 175.0 0.689 70.0, 1806.0 -1.27
FVB/NJ f 1678.0 296.0   10 93.7 0.177 1402.0, 2404.0 0.01
I/LnJ f 2045.0 628.0   13 174.0 0.307 816.0, 3258.0 0.59
KK/HlJ f 1106.0 409.0   9 136.0 0.37 795.0, 1813.0 -0.91
LG/J f 1635.0 497.0   10 157.0 0.304 446.0, 2047.0 -0.06
LP/J f 1213.0 332.0   8 117.0 0.274 929.0, 1953.0 -0.73
MA/MyJ f 2615.0 939.0   7 355.0 0.359 1634.0, 4533.0 1.5
MOLF/EiJ f 1911.0 633.0   7 239.0 0.331 1241.0, 2949.0 0.38
MRL/MpJ f 1654.0 272.0   10 85.9 0.164 1303.0, 2055.0 -0.03
NOD/ShiLtJ f 1947.0 520.0   11 157.0 0.267 1257.0, 2721.0 0.43
NON/ShiLtJ f 1779.0 426.0   12 123.0 0.24 1118.0, 2676.0 0.17
NOR/LtJ f 1769.0 510.0   10 161.0 0.288 949.0, 2386.0 0.15
NZO/HlLtJ f 704.0 329.0   7 124.0 0.467 180.0, 1207.0 -1.55
NZW/LacJ f 1254.0 192.0   10 60.7 0.153 893.0, 1530.0 -0.67
PERA/EiJ f 1269.0 303.0   8 107.0 0.239 878.0, 1607.0 -0.65
P/J f 1885.0 402.0   8 142.0 0.213 1213.0, 2318.0 0.34
PL/J f 2064.0 522.0   9 174.0 0.253 1297.0, 3029.0 0.62
PWD/PhJ f 1493.0 163.0   5 72.8 0.109 1236.0, 1662.0 -0.29
RIIIS/J f 2179.0 343.0   7 130.0 0.157 1824.0, 2596.0 0.8
SEA/GnJ f 1545.0 503.0   7 190.0 0.326 539.0, 2045.0 -0.21
SJL/J f 1276.0 294.0   10 93.0 0.231 799.0, 1944.0 -0.63
SM/J f 2376.0 500.0   9 167.0 0.211 1576.0, 2989.0 1.12
SWR/J f 1328.0 247.0   12 71.2 0.186 815.0, 1765.0 -0.55
WSB/EiJ f 2876.0 727.0   6 297.0 0.253 1955.0, 3915.0 1.91
ZALENDE/EiJ f 2409.0 364.0   7 138.0 0.151 1919.0, 2923.0 1.17


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 708.5556 158.841 1021.1104 396.0007
A/J f 377.3 150.6898 673.8156 80.7844
AKR/J f 2342.8 150.6898 2639.3156 2046.2844
BALB/cByJ f 1365.6154 132.1637 1625.6768 1105.554
BTBR T+ Itpr3tf/J f 2353.0 158.841 2665.5549 2040.4451
C3H/HeJ f 872.7778 158.841 1185.3327 560.2229
C57BL/6J f 1749.1667 112.3176 1970.1763 1528.157
C57BR/cdJ f 2521.5 194.5397 2904.3 2138.7
C57L/J f 1505.4286 180.1088 1859.8325 1151.0246
C58/J f 2884.7 150.6898 3181.2156 2588.1844
CBA/J f 762.2857 127.3562 1012.8871 511.6843
CZECHII/EiJ f 1621.6 213.1076 2040.9364 1202.2636
DBA/2J f 877.8333 137.5604 1148.5138 607.1529
FVB/NJ f 1677.7 150.6898 1974.2156 1381.1844
I/LnJ f 2045.0769 132.1637 2305.1383 1785.0155
KK/HlJ f 1106.0 158.841 1418.5549 793.4451
LG/J f 1635.2 150.6898 1931.7156 1338.6844
LP/J f 1212.875 168.4764 1544.3895 881.3605
MA/MyJ f 2614.5714 180.1088 2968.9754 2260.1675
MOLF/EiJ f 1911.1429 180.1088 2265.5468 1556.7389
MRL/MpJ f 1653.8 150.6898 1950.3156 1357.2844
NOD/ShiLtJ f 1947.0909 143.6771 2229.8074 1664.3744
NON/ShiLtJ f 1779.0833 137.5604 2049.7638 1508.4029
NOR/LtJ f 1769.2 150.6898 2065.7156 1472.6844
NZO/HlLtJ f 704.1429 180.1088 1058.5468 349.7389
NZW/LacJ f 1254.2 150.6898 1550.7156 957.6844
PERA/EiJ f 1269.0 168.4764 1600.5145 937.4855
P/J f 1885.375 168.4764 2216.8895 1553.8605
PL/J f 2064.0 158.841 2376.5549 1751.4451
PWD/PhJ f 1492.8 213.1076 1912.1364 1073.4636
RIIIS/J f 2179.4286 180.1088 2533.8325 1825.0246
SEA/GnJ f 1545.4286 180.1088 1899.8325 1191.0246
SJL/J f 1276.2 150.6898 1572.7156 979.6844
SM/J f 2375.5556 158.841 2688.1104 2063.0007
SWR/J f 1328.0833 137.5604 1598.7638 1057.4029
WSB/EiJ f 2876.5 194.5397 3259.3 2493.7
ZALENDE/EiJ f 2409.2857 180.1088 2763.6896 2054.8818




  GWAS USING LINEAR MIXED MODELS