Project measure / variable:   Tarantino2   OFT_center_duration_pct_ctrl

ID, description, units MPD:50626   OFT_center_duration_pct_ctrl   percentage of time spent in center of arena, 10 min test   [%]  control  
ovariectomy study
Data set, strains Tarantino2   inbred   37 strains     sex: f     age: 10-12wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Tarantino2 - percentage of time spent in center of arena, 10 min test control



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested37 strains
Mean of the strain means11.7   %
Median of the strain means11.5   %
SD of the strain means± 6.26
Coefficient of variation (CV)0.535
Min–max range of strain means0.550   –   27.4   %
Mean sample size per strain9.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 36 12958.613 359.9615 14.2536 < 0.0001
Residuals 316 7980.3057 25.2541


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.55 0.858   10 0.271 1.56 -1.78
A/J f 1.24 2.61   11 0.788 2.1 -1.67
AKR/J f 11.5 5.53   11 1.67 0.482 4.85, 21.4 -0.03
BALB/cByJ f 5.81 3.34   11 1.01 0.574 1.28, 11.1 -0.94
BTBR T+ Itpr3tf/J f 6.72 4.55   11 1.37 0.676 1.95, 16.0 -0.79
C3H/HeJ f 11.8 4.17   11 1.26 0.355 3.82, 18.9 0.02
C57BL/6J f 13.9 4.06   20 0.908 0.293 6.52, 21.9 0.35
C57BR/cdJ f 27.4 4.34   6 1.77 0.159 21.7, 33.9 2.51
C57L/J f 25.6 6.72   11 2.03 0.263 13.6, 38.4 2.22
C58/J f 18.9 8.29   10 2.62 0.437 9.95, 39.8 1.15
CBA/J f 9.71 5.27   11 1.59 0.543 -0.32
CZECHII/EiJ f 6.61 2.63   5 1.18 0.398 4.13, 10.4 -0.81
DBA/2J f 1.56 1.59   9 0.53 1.02 -1.62
FVB/NJ f 14.4 3.39   10 1.07 0.235 9.17, 21.2 0.43
I/LnJ f 12.9 4.43   12 1.28 0.344 4.22, 18.8 0.19
KK/HlJ f 13.2 4.64   6 1.89 0.351 8.15, 19.2 0.24
LG/J f 13.9 7.14   10 2.26 0.516 0.35
LP/J f 3.64 2.19   9 0.732 0.603 0.9, 8.32 -1.29
MA/MyJ f 24.4 4.69   9 1.56 0.192 17.9, 30.3 2.03
MOLF/EiJ f 13.2 4.9   7 1.85 0.371 8.43, 21.9 0.24
MRL/MpJ f 9.6 5.21   10 1.65 0.543 3.47, 21.1 -0.33
NOD/ShiLtJ f 18.3 8.81   10 2.79 0.481 5.27, 31.8 1.06
NON/ShiLtJ f 15.8 5.82   12 1.68 0.368 9.43, 28.0 0.66
NOR/LtJ f 17.8 6.08   12 1.76 0.342 8.67, 28.5 0.98
NZO/HlLtJ f 3.31 3.39   7 1.28 1.03 -1.34
NZW/LacJ f 8.29 3.93   10 1.24 0.474 2.37, 14.8 -0.54
PERA/EiJ f 11.6 6.89   8 2.44 0.593 4.33, 22.1 -0.02
P/J f 11.5 3.65   8 1.29 0.317 7.12, 18.5 -0.03
PL/J f 10.8 3.98   10 1.26 0.37 6.8, 18.9 -0.14
PWD/PhJ f 9.31 2.5   6 1.02 0.269 6.67, 14.0 -0.38
RIIIS/J f 11.1 4.07   6 1.66 0.366 5.72, 18.0 -0.09
SEA/GnJ f 12.8 11.1   6 4.53 0.866 1.93, 32.1 0.18
SJL/J f 6.69 4.8   10 1.52 0.717 1.78, 17.6 -0.8
SM/J f 8.85 3.84   12 1.11 0.433 1.22, 14.4 -0.45
SWR/J f 15.8 4.92   12 1.42 0.311 8.4, 24.8 0.66
WSB/EiJ f 11.2 4.21   8 1.49 0.376 3.62, 15.8 -0.08
ZALENDE/EiJ f 13.0 3.84   6 1.57 0.297 8.55, 18.6 0.21


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.55 1.5892 3.6767 0.0
A/J f 1.244 1.5152 4.2251 0.0
AKR/J f 11.4752 1.5152 14.4563 8.494
BALB/cByJ f 5.8091 1.5152 8.7902 2.8279
BTBR T+ Itpr3tf/J f 6.7224 1.5152 9.7035 3.7412
C3H/HeJ f 11.7567 1.5152 14.7379 8.7756
C57BL/6J f 13.8594 1.1237 16.0702 11.6485
C57BR/cdJ f 27.37 2.0516 31.4065 23.3335
C57L/J f 25.5773 1.5152 28.5584 22.5961
C58/J f 18.946 1.5892 22.0727 15.8193
CBA/J f 9.7064 1.5152 12.6875 6.7252
CZECHII/EiJ f 6.61 2.2474 11.0318 2.1882
DBA/2J f 1.5592 1.6751 4.855 0.0
FVB/NJ f 14.4177 1.5892 17.5444 11.291
I/LnJ f 12.9028 1.4507 15.7571 10.0486
KK/HlJ f 13.2405 2.0516 17.277 9.204
LG/J f 13.8523 1.5892 16.979 10.7256
LP/J f 3.639 1.6751 6.9348 0.3432
MA/MyJ f 24.3789 1.6751 27.6747 21.0831
MOLF/EiJ f 13.1939 1.8994 16.9309 9.4568
MRL/MpJ f 9.5983 1.5892 12.725 6.4716
NOD/ShiLtJ f 18.3174 1.5892 21.4441 15.1907
NON/ShiLtJ f 15.7938 1.4507 18.6481 12.9396
NOR/LtJ f 17.7631 1.4507 20.6173 14.9088
NZO/HlLtJ f 3.3071 1.8994 7.0442 0.0
NZW/LacJ f 8.285 1.5892 11.4117 5.1583
PERA/EiJ f 11.6171 1.7767 15.1128 8.1214
P/J f 11.5167 1.7767 15.0125 8.021
PL/J f 10.756 1.5892 13.8827 7.6293
PWD/PhJ f 9.3147 2.0516 13.3512 5.2782
RIIIS/J f 11.1083 2.0516 15.1448 7.0718
SEA/GnJ f 12.8 2.0516 16.8365 8.7635
SJL/J f 6.6904 1.5892 9.8171 3.5637
SM/J f 8.8475 1.4507 11.7017 5.9933
SWR/J f 15.8283 1.4507 18.6826 12.9741
WSB/EiJ f 11.1984 1.7767 14.6941 7.7027
ZALENDE/EiJ f 12.9528 2.0516 16.9893 8.9163




  GWAS USING LINEAR MIXED MODELS