Project measure / variable:   Tarantino2   OFT_center_duration_ctrl

ID, description, units MPD:50621   OFT_center_duration_ctrl   duration in center of arena, 10 min test   [s]  control  
ovariectomy study
Data set, strains Tarantino2   inbred   37 strains     sex: f     age: 10-12wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Tarantino2 - duration in center of arena, 10 min test control



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested37 strains
Mean of the strain means70.1   s
Median of the strain means69.1   s
SD of the strain means± 37.5
Coefficient of variation (CV)0.535
Min–max range of strain means3.30   –   164   s
Mean sample size per strain9.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 36 466535.0221 12959.3062 14.2538 < 0.0001
Residuals 316 287301.5861 909.1822


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.3 5.15   10 1.63 1.56 -1.78
A/J f 7.46 15.7   11 4.73 2.1 -1.67
AKR/J f 68.9 33.2   11 10.0 0.482 29.1, 128.0 -0.03
BALB/cByJ f 34.9 20.0   11 6.04 0.574 7.7, 66.6 -0.94
BTBR T+ Itpr3tf/J f 40.3 27.3   11 8.23 0.676 11.7, 95.9 -0.8
C3H/HeJ f 70.5 25.0   11 7.54 0.355 22.9, 113.0 0.01
C57BL/6J f 83.2 24.4   20 5.45 0.293 39.1, 131.0 0.35
C57BR/cdJ f 164.0 26.0   6 10.6 0.159 130.0, 204.0 2.5
C57L/J f 153.0 40.3   11 12.2 0.263 81.7, 230.0 2.21
C58/J f 114.0 49.7   10 15.7 0.437 59.7, 239.0 1.17
CBA/J f 58.2 31.6   11 9.54 0.543 -0.32
CZECHII/EiJ f 39.7 15.8   5 7.05 0.398 24.8, 62.7 -0.81
DBA/2J f 9.36 9.54   9 3.18 1.02 -1.62
FVB/NJ f 86.5 20.3   10 6.43 0.235 55.0, 127.0 0.44
I/LnJ f 77.4 26.6   12 7.68 0.344 25.3, 113.0 0.19
KK/HlJ f 79.4 27.8   6 11.4 0.35 48.9, 115.0 0.25
LG/J f 83.1 42.9   10 13.6 0.516 0.35
LP/J f 21.8 13.2   9 4.39 0.603 5.4, 49.9 -1.29
MA/MyJ f 146.0 28.1   9 9.37 0.192 107.0, 182.0 2.02
MOLF/EiJ f 79.2 29.4   7 11.1 0.371 50.6, 132.0 0.24
MRL/MpJ f 57.6 31.2   10 9.88 0.543 20.8, 127.0 -0.33
NOD/ShiLtJ f 110.0 52.9   10 16.7 0.481 31.6, 191.0 1.06
NON/ShiLtJ f 94.8 34.9   12 10.1 0.368 56.6, 168.0 0.66
NOR/LtJ f 107.0 36.5   12 10.5 0.342 52.0, 171.0 0.98
NZO/HlLtJ f 19.8 20.4   7 7.7 1.03 -1.34
NZW/LacJ f 49.7 23.6   10 7.45 0.474 14.2, 88.5 -0.54
PERA/EiJ f 69.7 41.3   8 14.6 0.593 26.0, 133.0 -0.01
P/J f 69.1 21.9   8 7.74 0.317 42.7, 111.0 -0.03
PL/J f 64.5 23.9   10 7.56 0.37 40.8, 113.0 -0.15
PWD/PhJ f 55.9 15.0   6 6.13 0.269 40.0, 83.8 -0.38
RIIIS/J f 66.6 24.4   6 9.96 0.366 34.3, 108.0 -0.09
SEA/GnJ f 76.8 66.5   6 27.2 0.867 11.6, 192.0 0.18
SJL/J f 40.1 28.8   10 9.1 0.717 10.7, 106.0 -0.8
SM/J f 53.1 23.0   12 6.64 0.433 7.3, 86.2 -0.45
SWR/J f 95.0 29.5   12 8.53 0.311 50.4, 149.0 0.66
WSB/EiJ f 67.2 25.3   8 8.93 0.376 21.7, 95.0 -0.08
ZALENDE/EiJ f 77.7 23.0   6 9.41 0.297 51.3, 112.0 0.2


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.3 9.5351 22.0603 0.0
A/J f 7.4636 9.0914 25.3509 0.0
AKR/J f 68.8545 9.0914 86.7418 50.9673
BALB/cByJ f 34.8545 9.0914 52.7418 16.9673
BTBR T+ Itpr3tf/J f 40.3364 9.0914 58.2236 22.4491
C3H/HeJ f 70.5364 9.0914 88.4236 52.6491
C57BL/6J f 83.16 6.7423 96.4255 69.8945
C57BR/cdJ f 164.2333 12.3098 188.4528 140.0139
C57L/J f 153.4545 9.0914 171.3418 135.5673
C58/J f 113.68 9.5351 132.4403 94.9197
CBA/J f 58.2364 9.0914 76.1236 40.3491
CZECHII/EiJ f 39.66 13.4847 66.1911 13.1289
DBA/2J f 9.3556 10.0509 29.1307 0.0
FVB/NJ f 86.5 9.5351 105.2603 67.7397
I/LnJ f 77.4167 8.7043 94.5424 60.2909
KK/HlJ f 79.4333 12.3098 103.6528 55.2139
LG/J f 83.12 9.5351 101.8803 64.3597
LP/J f 21.8333 10.0509 41.6084 2.0582
MA/MyJ f 146.2778 10.0509 166.0529 126.5027
MOLF/EiJ f 79.1714 11.3966 101.5943 56.7486
MRL/MpJ f 57.59 9.5351 76.3503 38.8297
NOD/ShiLtJ f 109.91 9.5351 128.6703 91.1497
NON/ShiLtJ f 94.7667 8.7043 111.8924 77.6409
NOR/LtJ f 106.5833 8.7043 123.7091 89.4576
NZO/HlLtJ f 19.8429 11.3966 42.2657 0.0
NZW/LacJ f 49.71 9.5351 68.4703 30.9497
PERA/EiJ f 69.7 10.6606 90.6747 48.7253
P/J f 69.1 10.6606 90.0747 48.1253
PL/J f 64.54 9.5351 83.3003 45.7797
PWD/PhJ f 55.8833 12.3098 80.1028 31.6639
RIIIS/J f 66.65 12.3098 90.8695 42.4305
SEA/GnJ f 76.8 12.3098 101.0195 52.5805
SJL/J f 40.14 9.5351 58.9003 21.3797
SM/J f 53.0833 8.7043 70.2091 35.9576
SWR/J f 94.975 8.7043 112.1007 77.8493
WSB/EiJ f 67.1875 10.6606 88.1622 46.2128
ZALENDE/EiJ f 77.7167 12.3098 101.9361 53.4972




  GWAS USING LINEAR MIXED MODELS