Project measure / variable:   Tarantino2   OFT_center_distance_trt

ID, description, units MPD:50617   OFT_center_distance_trt   distance traveled in center of arena, 10 min test   [cm]  ovariectomy  
ovariectomy study
Data set, strains Tarantino2   inbred   37 strains     sex: f     age: 10-12wks
Procedure open field test
Ontology mappings

  STRAIN COMPARISON PLOT
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Tarantino2 - distance traveled in center of arena, 10 min test ovariectomy



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested37 strains
Mean of the strain means516   cm
Median of the strain means426   cm
SD of the strain means± 368
Coefficient of variation (CV)0.712
Min–max range of strain means9.70   –   1440   cm
Mean sample size per strain9.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 36 42904163.1815 1191782.3106 18.3645 < 0.0001
Residuals 307 19923081.4581 64896.0308


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 17.2 40.8   9 13.6 2.37 -1.36
A/J f 9.7 28.9   10 9.15 2.98 -1.38
AKR/J f 396.0 219.0   10 69.4 0.554 55.0, 804.0 -0.33
BALB/cByJ f 163.0 184.0   13 51.1 1.13 -0.96
BTBR T+ Itpr3tf/J f 440.0 211.0   9 70.4 0.479 26.0, 616.0 -0.21
C3H/HeJ f 403.0 344.0   9 115.0 0.852 84.0, 1203.0 -0.31
C57BL/6J f 675.0 293.0   18 69.0 0.433 48.0, 1123.0 0.43
C57BR/cdJ f 1440.0 473.0   6 193.0 0.328 793.0, 2085.0 2.51
C57L/J f 838.0 309.0   7 117.0 0.369 352.0, 1138.0 0.88
C58/J f 936.0 425.0   10 134.0 0.454 163.0, 1620.0 1.14
CBA/J f 149.0 161.0   14 43.1 1.08 8.0, 549.0 -1.0
CZECHII/EiJ f 238.0 59.6   5 26.7 0.251 183.0, 326.0 -0.76
DBA/2J f 54.0 65.1   12 18.8 1.21 -1.26
FVB/NJ f 807.0 151.0   10 47.8 0.187 532.0, 981.0 0.79
I/LnJ f 823.0 356.0   13 98.6 0.432 442.0, 1659.0 0.84
KK/HlJ f 258.0 159.0   9 52.9 0.614 78.0, 497.0 -0.7
LG/J f 333.0 284.0   10 89.9 0.854 -0.5
LP/J f 116.0 125.0   8 44.1 1.07 1.0, 376.0 -1.09
MA/MyJ f 1308.0 249.0   7 94.2 0.191 1119.0, 1848.0 2.15
MOLF/EiJ f 426.0 336.0   7 127.0 0.788 111.0, 1027.0 -0.24
MRL/MpJ f 297.0 239.0   10 75.6 0.804 2.0, 651.0 -0.6
NOD/ShiLtJ f 1286.0 277.0   11 83.4 0.215 939.0, 1943.0 2.1
NON/ShiLtJ f 726.0 206.0   12 59.6 0.284 207.0, 981.0 0.57
NOR/LtJ f 948.0 344.0   10 109.0 0.363 448.0, 1546.0 1.18
NZO/HlLtJ f 70.7 80.1   7 30.3 1.13 -1.21
NZW/LacJ f 244.0 143.0   10 45.1 0.584 100.0, 530.0 -0.74
PERA/EiJ f 304.0 200.0   8 70.7 0.659 170.0, 758.0 -0.58
P/J f 436.0 199.0   8 70.5 0.457 94.0, 750.0 -0.22
PL/J f 761.0 239.0   9 79.5 0.314 405.0, 1205.0 0.67
PWD/PhJ f 358.0 236.0   5 106.0 0.66 -0.43
RIIIS/J f 670.0 131.0   7 49.3 0.195 434.0, 801.0 0.42
SEA/GnJ f 284.0 287.0   7 108.0 1.01 1.0, 866.0 -0.63
SJL/J f 459.0 383.0   10 121.0 0.834 22.0, 1094.0 -0.15
SM/J f 292.0 124.0   9 41.3 0.425 122.0, 543.0 -0.61
SWR/J f 614.0 321.0   12 92.6 0.522 375.0, 1580.0 0.27
WSB/EiJ f 695.0 212.0   6 86.7 0.305 376.0, 1034.0 0.49
ZALENDE/EiJ f 815.0 430.0   7 163.0 0.528 279.0, 1488.0 0.81


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 17.2222 84.9157 184.3126 0.0
A/J f 9.7 80.5581 168.2158 0.0
AKR/J f 396.4 80.5581 554.9158 237.8842
BALB/cByJ f 162.6923 70.6541 301.7199 23.6647
BTBR T+ Itpr3tf/J f 440.4444 84.9157 607.5348 273.3541
C3H/HeJ f 403.4444 84.9157 570.5348 236.3541
C57BL/6J f 675.4444 60.0444 793.5952 557.2937
C57BR/cdJ f 1439.6667 104.0 1644.3097 1235.0236
C57L/J f 838.0 96.2853 1027.4627 648.5373
C58/J f 936.1 80.5581 1094.6158 777.5842
CBA/J f 148.7143 68.084 282.6846 14.744
CZECHII/EiJ f 237.8 113.9263 461.9752 13.6248
DBA/2J f 54.0 73.5391 198.7045 0.0
FVB/NJ f 807.4 80.5581 965.9158 648.8842
I/LnJ f 822.9231 70.6541 961.9507 683.8955
KK/HlJ f 258.4444 84.9157 425.5348 91.3541
LG/J f 332.9 80.5581 491.4158 174.3842
LP/J f 116.5 90.0667 293.7261 0.0
MA/MyJ f 1307.8571 96.2853 1497.3198 1118.3945
MOLF/EiJ f 426.0 96.2853 615.4627 236.5373
MRL/MpJ f 297.3 80.5581 455.8158 138.7842
NOD/ShiLtJ f 1285.5455 76.8091 1436.6844 1134.4065
NON/ShiLtJ f 725.9167 73.5391 870.6212 581.2122
NOR/LtJ f 948.2 80.5581 1106.7158 789.6842
NZO/HlLtJ f 70.7143 96.2853 260.1769 0.0
NZW/LacJ f 244.0 80.5581 402.5158 85.4842
PERA/EiJ f 303.5 90.0667 480.7261 126.2739
P/J f 436.125 90.0667 613.3511 258.8989
PL/J f 760.5556 84.9157 927.6459 593.4652
PWD/PhJ f 358.0 113.9263 582.1752 133.8248
RIIIS/J f 670.0 96.2853 859.4627 480.5373
SEA/GnJ f 284.4286 96.2853 473.8912 94.9659
SJL/J f 459.4 80.5581 617.9158 300.8842
SM/J f 291.8889 84.9157 458.9792 124.7985
SWR/J f 613.75 73.5391 758.4545 469.0455
WSB/EiJ f 695.0 104.0 899.6431 490.3569
ZALENDE/EiJ f 815.2857 96.2853 1004.7484 625.8231




  GWAS USING LINEAR MIXED MODELS