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Project measure / variable:   Tarantino2   OFT_center_distance_ctrl

ID, description, units MPD:50616   OFT_center_distance_ctrl   distance traveled in center of arena, 10 min test   [cm]  control  
ovariectomy study
Data set, strains Tarantino2   inbred   37 strains     sex: f     age: 10-12wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Tarantino2 - distance traveled in center of arena, 10 min test control



  MEASURE SUMMARY
Measure Summary Female
Number of strains tested37 strains
Mean of the strain means643   cm
Median of the strain means471   cm
SD of the strain means± 492
Coefficient of variation (CV)0.766
Min–max range of strain means11.2   –   2443   cm
Mean sample size per strain9.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 36 73215525.7481 2033764.6041 12.8739 < 0.0001
Residuals 316 49920505.249 157976.2824


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 11.2 29.9   10 9.46 2.67 -1.28
A/J f 14.6 38.4   11 11.6 2.62 -1.28
AKR/J f 562.0 350.0   11 106.0 0.623 86.0, 1100.0 -0.16
BALB/cByJ f 323.0 219.0   11 66.2 0.679 57.0, 661.0 -0.65
BTBR T+ Itpr3tf/J f 440.0 212.0   11 64.0 0.482 165.0, 865.0 -0.41
C3H/HeJ f 362.0 173.0   11 52.2 0.479 102.0, 625.0 -0.57
C57BL/6J f 860.0 300.0   20 67.1 0.349 207.0, 1326.0 0.44
C57BR/cdJ f 2443.0 1385.0   6 565.0 0.567 1496.0, 5050.0 3.65
C57L/J f 989.0 399.0   11 120.0 0.404 479.0, 1706.0 0.7
C58/J f 1411.0 598.0   10 189.0 0.424 662.0, 2532.0 1.56
CBA/J f 167.0 132.0   11 39.9 0.79 -0.97
CZECHII/EiJ f 359.0 30.0   5 13.4 0.0835 339.0, 411.0 -0.58
DBA/2J f 39.1 45.8   9 15.3 1.17 -1.23
FVB/NJ f 922.0 183.0   10 58.0 0.199 689.0, 1269.0 0.57
I/LnJ f 928.0 275.0   12 79.3 0.296 254.0, 1183.0 0.58
KK/HlJ f 419.0 204.0   6 83.1 0.486 256.0, 739.0 -0.46
LG/J f 587.0 336.0   10 106.0 0.572 -0.11
LP/J f 160.0 109.0   9 36.3 0.682 3.0, 284.0 -0.98
MA/MyJ f 1345.0 370.0   9 123.0 0.275 827.0, 2045.0 1.43
MOLF/EiJ f 471.0 185.0   7 69.9 0.393 229.0, 825.0 -0.35
MRL/MpJ f 410.0 233.0   10 73.6 0.567 112.0, 773.0 -0.47
NOD/ShiLtJ f 1336.0 1025.0   10 324.0 0.767 276.0, 3945.0 1.41
NON/ShiLtJ f 1177.0 891.0   12 257.0 0.757 499.0, 3772.0 1.08
NOR/LtJ f 1120.0 468.0   12 135.0 0.418 358.0, 2080.0 0.97
NZO/HlLtJ f 45.7 36.4   7 13.7 0.796 -1.21
NZW/LacJ f 258.0 102.0   10 32.2 0.394 110.0, 489.0 -0.78
PERA/EiJ f 451.0 320.0   8 113.0 0.709 139.0, 1071.0 -0.39
P/J f 621.0 236.0   8 83.4 0.38 271.0, 928.0 -0.05
PL/J f 764.0 249.0   10 78.8 0.326 461.0, 1198.0 0.25
PWD/PhJ f 460.0 229.0   6 93.4 0.497 189.0, 737.0 -0.37
RIIIS/J f 810.0 221.0   6 90.3 0.273 536.0, 1150.0 0.34
SEA/GnJ f 316.0 277.0   6 113.0 0.877 50.0, 695.0 -0.66
SJL/J f 332.0 311.0   10 98.3 0.938 41.0, 1082.0 -0.63
SM/J f 424.0 258.0   12 74.4 0.608 54.0, 1038.0 -0.45
SWR/J f 774.0 245.0   12 70.8 0.317 410.0, 1152.0 0.27
WSB/EiJ f 1011.0 428.0   8 151.0 0.423 282.0, 1552.0 0.75
ZALENDE/EiJ f 675.0 144.0   6 58.7 0.213 468.0, 888.0 0.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 11.2 125.6886 258.4923 0.0
A/J f 14.6364 119.8394 250.4203 0.0
AKR/J f 561.7273 119.8394 797.5112 325.9433
BALB/cByJ f 323.2727 119.8394 559.0567 87.4888
BTBR T+ Itpr3tf/J f 440.0909 119.8394 675.8749 204.307
C3H/HeJ f 362.0 119.8394 597.7839 126.2161
C57BL/6J f 859.95 88.8753 1034.8121 685.0879
C57BR/cdJ f 2442.8333 162.2633 2762.0863 2123.5804
C57L/J f 989.0 119.8394 1224.7839 753.2161
C58/J f 1411.3 125.6886 1658.5923 1164.0077
CBA/J f 167.4545 119.8394 403.2385 0.0
CZECHII/EiJ f 359.0 177.7505 708.7241 9.2759
DBA/2J f 39.1111 132.4874 299.7801 0.0
FVB/NJ f 921.9 125.6886 1169.1923 674.6077
I/LnJ f 928.0833 114.7375 1153.8293 702.3374
KK/HlJ f 419.3333 162.2633 738.5863 100.0804
LG/J f 586.6 125.6886 833.8923 339.3077
LP/J f 159.7778 132.4874 420.4467 0.0
MA/MyJ f 1345.4444 132.4874 1606.1134 1084.7755
MOLF/EiJ f 471.0 150.2266 766.5708 175.4292
MRL/MpJ f 410.3 125.6886 657.5923 163.0077
NOD/ShiLtJ f 1335.8 125.6886 1583.0923 1088.5077
NON/ShiLtJ f 1176.6667 114.7375 1402.4126 950.9207
NOR/LtJ f 1120.0 114.7375 1345.7459 894.2541
NZO/HlLtJ f 45.7143 150.2266 341.2851 0.0
NZW/LacJ f 258.2 125.6886 505.4923 10.9077
PERA/EiJ f 451.25 140.5241 727.7312 174.7688
P/J f 621.0 140.5241 897.4812 344.5188
PL/J f 763.9 125.6886 1011.1923 516.6077
PWD/PhJ f 459.8333 162.2633 779.0863 140.5804
RIIIS/J f 809.8333 162.2633 1129.0863 490.5804
SEA/GnJ f 316.1667 162.2633 635.4196 0.0
SJL/J f 331.5 125.6886 578.7923 84.2077
SM/J f 424.0 114.7375 649.7459 198.2541
SWR/J f 774.5 114.7375 1000.2459 548.7541
WSB/EiJ f 1011.375 140.5241 1287.8562 734.8938
ZALENDE/EiJ f 675.3333 162.2633 994.5863 356.0804




  GWAS USING LINEAR MIXED MODELS