Phenotype measure:   HMDPpheno8   caproate

ID, description, units MPD:50373   caproate   liver caproate (6:0) (16h fast), relative abundance  
Data set, strains HMDPpheno8   HMDP   99 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

HMDPpheno8 - liver caproate (6:0) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested99 strains
Mean of the strain means24054   None
Median of the strain means21358   None
SD of the strain means± 10916
Coefficient of variation (CV)0.454
Min–max range of strain means7938   –   51559   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 20 1764200036.4758 88210001.8238 1.0715 0.4252
Residuals 28 2305009142.9267 82321755.1045


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 21171.0 0.0   1   0.0 0.0 21171.0, 21171.0 -0.26
A/J m 20184.0 6866.0   2   4855.0 0.34 15328.0, 25039.0 -0.35
AKR/J m 48530.0 0.0   1   0.0 0.0 48530.0, 48530.0 2.24
AXB10/PgnJ m 28194.0 0.0   1   0.0 0.0 28194.0, 28194.0 0.38
AXB12/PgnJ m 33611.0 0.0   1   0.0 0.0 33611.0, 33611.0 0.88
AXB19a/PgnJ m 17476.0 0.0   1   0.0 0.0 17476.0, 17476.0 -0.6
AXB19b/PgnJ m 19670.0 6927.0   2   4898.0 0.352 14772.0, 24569.0 -0.4
AXB1/PgnJ m 10690.0 0.0   1   0.0 0.0 10690.0, 10690.0 -1.22
AXB23/PgnJ m 20512.0 0.0   1   0.0 0.0 20512.0, 20512.0 -0.32
AXB24/PgnJ m 22572.0 22666.0   2   16027.0 1.0 6544.0, 38599.0 -0.14
AXB2/PgnJ m 23148.0 0.0   1   0.0 0.0 23148.0, 23148.0 -0.08
AXB4/PgnJ m 36467.0 0.0   1   0.0 0.0 36467.0, 36467.0 1.14
AXB5/PgnJ m 21802.0 0.0   1   0.0 0.0 21802.0, 21802.0 -0.21
AXB6/PgnJ m 19940.0 0.0   1   0.0 0.0 19940.0, 19940.0 -0.38
AXB8/PgnJ m 8904.0 0.0   1   0.0 0.0 8904.0, 8904.0 -1.39
BALB/cJ m 20613.0 6768.0   3 3907.0 0.328 13804.0, 27338.0 -0.32
BTBR T+ Itpr3tf/J m 50784.0 0.0   1   0.0 0.0 50784.0, 50784.0 2.45
BXA11/PgnJ m 19030.0 0.0   1   0.0 0.0 19030.0, 19030.0 -0.46
BXA12/PgnJ m 50830.0 0.0   1   0.0 0.0 50830.0, 50830.0 2.45
BXA14/PgnJ m 14119.0 0.0   1   0.0 0.0 14119.0, 14119.0 -0.91
BXA16/PgnJ m 28915.0 1994.0   2   1410.0 0.069 27505.0, 30325.0 0.45
BXA1/PgnJ m 33228.0 0.0   1   0.0 0.0 33228.0, 33228.0 0.84
BXA24/PgnJ m 24680.0 0.0   1   0.0 0.0 24680.0, 24680.0 0.06
BXA25/PgnJ m 19405.0 0.0   1   0.0 0.0 19405.0, 19405.0 -0.43
BXA26/PgnJ m 12230.0 0.0   1   0.0 0.0 12230.0, 12230.0 -1.08
BXA2/PgnJ m 30956.0 0.0   1   0.0 0.0 30956.0, 30956.0 0.63
BXA4/PgnJ m 23200.0 0.0   1   0.0 0.0 23200.0, 23200.0 -0.08
BXA7/PgnJ m 21452.0 0.0   1   0.0 0.0 21452.0, 21452.0 -0.24
BXA8/PgnJ m 8795.0 0.0   1   0.0 0.0 8795.0, 8795.0 -1.4
BXD11/TyJ m 18627.0 0.0   1   0.0 0.0 18627.0, 18627.0 -0.5
BXD12/TyJ m 18353.0 0.0   1   0.0 0.0 18353.0, 18353.0 -0.52
BXD13/TyJ m 29352.0 0.0   1   0.0 0.0 29352.0, 29352.0 0.49
BXD14/TyJ m 40784.0 0.0   1   0.0 0.0 40784.0, 40784.0 1.53
BXD15/TyJ m 18480.0 0.0   1   0.0 0.0 18480.0, 18480.0 -0.51
BXD18/TyJ m 22933.0 0.0   1   0.0 0.0 22933.0, 22933.0 -0.1
BXD19/TyJ m 13973.0 6539.0   2   4624.0 0.468 9350.0, 18597.0 -0.92
BXD1/TyJ m 27215.0 0.0   1   0.0 0.0 27215.0, 27215.0 0.29
BXD20/TyJ m 31251.0 0.0   1   0.0 0.0 31251.0, 31251.0 0.66
BXD21/TyJ m 16150.0 0.0   1   0.0 0.0 16150.0, 16150.0 -0.72
BXD22/TyJ m 26308.0 0.0   1   0.0 0.0 26308.0, 26308.0 0.21
BXD24/TyJ m 9160.0 0.0   1   0.0 0.0 9160.0, 9160.0 -1.36
BXD24/TyJ-Cep290rd16/J m 8749.0 0.0   1   0.0 0.0 8749.0, 8749.0 -1.4
BXD28/TyJ m 21671.0 508.0   2   359.0 0.0234 21312.0, 22030.0 -0.22
BXD29-Tlr4lps-2J/J m 19245.0 0.0   1   0.0 0.0 19245.0, 19245.0 -0.44
BXD2/TyJ m 28725.0 0.0   1   0.0 0.0 28725.0, 28725.0 0.43
BXD32/TyJ m 10300.0 0.0   1   0.0 0.0 10300.0, 10300.0 -1.26
BXD33/TyJ m 28858.0 0.0   1   0.0 0.0 28858.0, 28858.0 0.44
BXD34/TyJ m 11424.0 0.0   1   0.0 0.0 11424.0, 11424.0 -1.16
BXD36/TyJ m 26811.0 0.0   1   0.0 0.0 26811.0, 26811.0 0.25
BXD38/TyJ m 11594.0 0.0   1   0.0 0.0 11594.0, 11594.0 -1.14
BXD39/TyJ m 13582.0 0.0   1   0.0 0.0 13582.0, 13582.0 -0.96
BXD40/TyJ m 12416.0 0.0   1   0.0 0.0 12416.0, 12416.0 -1.07
BXD42/TyJ m 38843.0 0.0   1   0.0 0.0 38843.0, 38843.0 1.35
BXD5/TyJ m 25679.0 0.0   1   0.0 0.0 25679.0, 25679.0 0.15
BXD6/TyJ m 42742.0 0.0   1   0.0 0.0 42742.0, 42742.0 1.71
BXD8/TyJ m 21375.0 0.0   1   0.0 0.0 21375.0, 21375.0 -0.25
BXD9/TyJ m 19082.0 0.0   1   0.0 0.0 19082.0, 19082.0 -0.46
BXH10/TyJ m 18080.0 0.0   1   0.0 0.0 18080.0, 18080.0 -0.55
BXH19/TyJ m 50684.0 0.0   1   0.0 0.0 50684.0, 50684.0 2.44
BXH20/KccJ m 27138.0 0.0   1   0.0 0.0 27138.0, 27138.0 0.28
BXH22/KccJ m 25742.0 0.0   1   0.0 0.0 25742.0, 25742.0 0.15
BXH2/TyJ m 27833.0 0.0   1   0.0 0.0 27833.0, 27833.0 0.35
BXH4/TyJ m 36383.0 11970.0   2   8464.0 0.329 27918.0, 44847.0 1.13
BXH6/TyJ m 24693.0 0.0   1   0.0 0.0 24693.0, 24693.0 0.06
BXH7/TyJ m 42137.0 0.0   1   0.0 0.0 42137.0, 42137.0 1.66
BXH8/TyJ m 45694.0 0.0   1   0.0 0.0 45694.0, 45694.0 1.98
BXH9/TyJ m 32262.0 0.0   1   0.0 0.0 32262.0, 32262.0 0.75
C3H/HeJ m 45042.0 0.0   1   0.0 0.0 45042.0, 45042.0 1.92
C57BL/6J m 16400.0 6039.0   4 3019.0 0.368 8458.0, 22766.0 -0.7
C58/J m 16783.0 0.0   1   0.0 0.0 16783.0, 16783.0 -0.67
CAST/EiJ m 13990.0 0.0   1   0.0 0.0 13990.0, 13990.0 -0.92
CBA/J m 18817.0 0.0   1   0.0 0.0 18817.0, 18817.0 -0.48
CE/J m 23357.0 0.0   1   0.0 0.0 23357.0, 23357.0 -0.06
CXB11/HiAJ m 22453.0 3880.0   2   2744.0 0.173 19709.0, 25197.0 -0.15
CXB12/HiAJ m 12955.0 3413.0   2   2414.0 0.263 10541.0, 15368.0 -1.02
CXB13/HiAJ m 31497.0 21127.0   3 12197.0 0.671 17576.0, 55806.0 0.68
CXB1/ByJ m 21358.0 4070.0   2   2878.0 0.191 18480.0, 24236.0 -0.25
CXB2/ByJ m 20871.0 44.5   2   31.5 0.00213 20839.0, 20902.0 -0.29
CXB3/ByJ m 15579.0 1564.0   2   1106.0 0.1 14474.0, 16685.0 -0.78
CXB4/ByJ m 17957.0 11026.0   2   7796.0 0.614 10160.0, 25754.0 -0.56
CXB6/ByJ m 15249.0 5065.0   3 2924.0 0.332 12200.0, 21095.0 -0.81
CXB7/ByJ m 16797.0 329.0   2   232.0 0.0196 16564.0, 17029.0 -0.66
CXB8/HiAJ m 16148.0 8394.0   3 4846.0 0.52 6743.0, 22877.0 -0.72
CXB9/HiAJ m 9314.0 3878.0   2   2742.0 0.416 6572.0, 12056.0 -1.35
DBA/2J m 19047.0 4331.0   3 2501.0 0.227 14618.0, 23273.0 -0.46
FVB/NJ m 15019.0 0.0   1   0.0 0.0 15019.0, 15019.0 -0.83
KK/HlJ m 7938.0 0.0   1   0.0 0.0 7938.0, 7938.0 -1.48
LG/J m 51559.0 0.0   1   0.0 0.0 51559.0, 51559.0 2.52
LP/J m 41758.0 0.0   1   0.0 0.0 41758.0, 41758.0 1.62
MA/MyJ m 22383.0 0.0   1   0.0 0.0 22383.0, 22383.0 -0.15
NOD/ShiLtJ m 14344.0 0.0   1   0.0 0.0 14344.0, 14344.0 -0.89
NON/ShiLtJ m 34196.0 0.0   1   0.0 0.0 34196.0, 34196.0 0.93
NZW/LacJ m 20915.0 0.0   1   0.0 0.0 20915.0, 20915.0 -0.29
PL/J m 30301.0 0.0   1   0.0 0.0 30301.0, 30301.0 0.57
RIIIS/J m 32327.0 0.0   1   0.0 0.0 32327.0, 32327.0 0.76
SEA/GnJ m 21005.0 0.0   1   0.0 0.0 21005.0, 21005.0 -0.28
SJL/J m 47803.0 0.0   1   0.0 0.0 47803.0, 47803.0 2.18
SM/J m 14490.0 0.0   1   0.0 0.0 14490.0, 14490.0 -0.88
SWR/J m 18242.0 0.0   1   0.0 0.0 18242.0, 18242.0 -0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 20183.55 6415.6744 33325.4632 7041.6368
AXB19b/PgnJ m 19670.3 6415.6744 32812.2132 6528.3868
AXB24/PgnJ m 22571.95 6415.6744 35713.8632 9430.0368
BALB/cJ m 20613.2333 5238.3762 31343.5605 9882.9061
BXA16/PgnJ m 28915.1 6415.6744 42057.0132 15773.1868
BXD19/TyJ m 13973.2 6415.6744 27115.1132 831.2868
BXD28/TyJ m 21671.4 6415.6744 34813.3132 8529.4868
BXH4/TyJ m 36382.65 6415.6744 49524.5632 23240.7368
C57BL/6J m 16399.65 4536.5668 25692.3859 7106.9141
CXB11/HiAJ m 22453.2 6415.6744 35595.1132 9311.2868
CXB12/HiAJ m 12954.9 6415.6744 26096.8132 0.0
CXB13/HiAJ m 31496.7667 5238.3762 42227.0939 20766.4395
CXB1/ByJ m 21358.15 6415.6744 34500.0632 8216.2368
CXB2/ByJ m 20870.85 6415.6744 34012.7632 7728.9368
CXB3/ByJ m 15579.25 6415.6744 28721.1632 2437.3368
CXB4/ByJ m 17957.0 6415.6744 31098.9132 4815.0868
CXB6/ByJ m 15248.7667 5238.3762 25979.0939 4518.4395
CXB7/ByJ m 16796.9 6415.6744 29938.8132 3654.9868
CXB8/HiAJ m 16148.0 5238.3762 26878.3272 5417.6728
CXB9/HiAJ m 9313.9 6415.6744 22455.8132 0.0
DBA/2J m 19046.6333 5238.3762 29776.9605 8316.3061




  GWAS USING LINEAR MIXED MODELS