Phenotype measure:   HMDPpheno7   ergothioneine

ID, description, units MPD:50250   ergothioneine   ergothioneine (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno7 - ergothioneine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means5055032   None
Median of the strain means4881566   None
SD of the strain means± 1505639
Coefficient of variation (CV)0.298
Min–max range of strain means832838   –   10093116   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 64329790368148.4 3063323350864.21 3.1069 0.0016
Residuals 34 33523391876085.3 985982114002.51


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 3025080.0 0.0   1   0.0 0.0 3025080.0, 3025080.0 -1.35
A/J m 4831158.0 643600.0   2   455094.0 0.133 4376064.0, 5286252.0 -0.15
AKR/J m 4393848.0 0.0   1   0.0 0.0 4393848.0, 4393848.0 -0.44
AXB10/PgnJ m 4456352.0 0.0   1   0.0 0.0 4456352.0, 4456352.0 -0.4
AXB12/PgnJ m 6157596.0 0.0   1   0.0 0.0 6157596.0, 6157596.0 0.73
AXB13/PgnJ m 4707912.0 0.0   1   0.0 0.0 4707912.0, 4707912.0 -0.23
AXB15/PgnJ m 4783338.0 0.0   1   0.0 0.0 4783338.0, 4783338.0 -0.18
AXB19a/PgnJ m 5478388.0 0.0   1   0.0 0.0 5478388.0, 5478388.0 0.28
AXB19b/PgnJ m 6725844.0 1624824.0   2   1148924.0 0.242 5576920.0, 7874768.0 1.11
AXB19/PgnJ m 6365484.0 0.0   1   0.0 0.0 6365484.0, 6365484.0 0.87
AXB1/PgnJ m 9754833.0 0.0   1   0.0 0.0 9754833.0, 9754833.0 3.12
AXB23/PgnJ m 6534626.0 0.0   1   0.0 0.0 6534626.0, 6534626.0 0.98
AXB24/PgnJ m 5488722.0 208091.0   2   147142.0 0.0379 5341580.0, 5635865.0 0.29
AXB2/PgnJ m 6286401.0 0.0   1   0.0 0.0 6286401.0, 6286401.0 0.82
AXB4/PgnJ m 5910162.0 0.0   1   0.0 0.0 5910162.0, 5910162.0 0.57
AXB5/PgnJ m 5946517.0 0.0   1   0.0 0.0 5946517.0, 5946517.0 0.59
AXB6/PgnJ m 7691610.0 0.0   1   0.0 0.0 7691610.0, 7691610.0 1.75
AXB8/PgnJ m 5716306.0 0.0   1   0.0 0.0 5716306.0, 5716306.0 0.44
BALB/cJ m 3287349.0 794140.0   3 458497.0 0.242 2376766.0, 3836381.0 -1.17
BTBR T+ Itpr3tf/J m 4003991.0 0.0   1   0.0 0.0 4003991.0, 4003991.0 -0.7
BUB/BnJ m 5768578.0 0.0   1   0.0 0.0 5768578.0, 5768578.0 0.47
BXA11/PgnJ m 5155782.0 0.0   1   0.0 0.0 5155782.0, 5155782.0 0.07
BXA12/PgnJ m 1875593.0 0.0   1   0.0 0.0 1875593.0, 1875593.0 -2.11
BXA13/PgnJ m 6266432.0 0.0   1   0.0 0.0 6266432.0, 6266432.0 0.8
BXA14/PgnJ m 7225174.0 0.0   1   0.0 0.0 7225174.0, 7225174.0 1.44
BXA16/PgnJ m 4794650.0 1951039.0   2   1379593.0 0.407 3415058.0, 6174243.0 -0.17
BXA1/PgnJ m 4761519.0 0.0   1   0.0 0.0 4761519.0, 4761519.0 -0.19
BXA24/PgnJ m 4823326.0 0.0   1   0.0 0.0 4823326.0, 4823326.0 -0.15
BXA25/PgnJ m 2392181.0 0.0   1   0.0 0.0 2392181.0, 2392181.0 -1.77
BXA26/PgnJ m 5662441.0 0.0   1   0.0 0.0 5662441.0, 5662441.0 0.4
BXA2/PgnJ m 4862560.0 0.0   1   0.0 0.0 4862560.0, 4862560.0 -0.13
BXA4/PgnJ m 832838.0 0.0   1   0.0 0.0 832838.0, 832838.0 -2.8
BXA7/PgnJ m 6035070.0 0.0   1   0.0 0.0 6035070.0, 6035070.0 0.65
BXA8/PgnJ m 4083041.0 0.0   1   0.0 0.0 4083041.0, 4083041.0 -0.65
BXD11/TyJ m 5472096.0 0.0   1   0.0 0.0 5472096.0, 5472096.0 0.28
BXD12/TyJ m 6652634.0 0.0   1   0.0 0.0 6652634.0, 6652634.0 1.06
BXD13/TyJ m 2589785.0 0.0   1   0.0 0.0 2589785.0, 2589785.0 -1.64
BXD14/TyJ m 4971344.0 0.0   1   0.0 0.0 4971344.0, 4971344.0 -0.06
BXD15/TyJ m 2843631.0 0.0   1   0.0 0.0 2843631.0, 2843631.0 -1.47
BXD18/TyJ m 6677958.0 0.0   1   0.0 0.0 6677958.0, 6677958.0 1.08
BXD19/TyJ m 5257478.0 439061.0   2   310463.0 0.0835 4947015.0, 5567940.0 0.13
BXD1/TyJ m 7110904.0 0.0   1   0.0 0.0 7110904.0, 7110904.0 1.37
BXD20/TyJ m 6246334.0 0.0   1   0.0 0.0 6246334.0, 6246334.0 0.79
BXD21/TyJ m 3827429.0 0.0   1   0.0 0.0 3827429.0, 3827429.0 -0.82
BXD22/TyJ m 5611368.0 0.0   1   0.0 0.0 5611368.0, 5611368.0 0.37
BXD24/TyJ m 4870302.0 0.0   1   0.0 0.0 4870302.0, 4870302.0 -0.12
BXD24/TyJ-Cep290rd16/J m 2824521.0 0.0   1   0.0 0.0 2824521.0, 2824521.0 -1.48
BXD28/TyJ m 4486847.0 1323547.0   2   935889.0 0.295 3550958.0, 5422736.0 -0.38
BXD29-Tlr4lps-2J/J m 4947215.0 0.0   1   0.0 0.0 4947215.0, 4947215.0 -0.07
BXD2/TyJ m 3187368.0 0.0   1   0.0 0.0 3187368.0, 3187368.0 -1.24
BXD32/TyJ m 4751124.0 0.0   1   0.0 0.0 4751124.0, 4751124.0 -0.2
BXD33/TyJ m 5457818.0 0.0   1   0.0 0.0 5457818.0, 5457818.0 0.27
BXD34/TyJ m 4686855.0 0.0   1   0.0 0.0 4686855.0, 4686855.0 -0.24
BXD36/TyJ m 3198320.0 0.0   1   0.0 0.0 3198320.0, 3198320.0 -1.23
BXD38/TyJ m 7895608.0 0.0   1   0.0 0.0 7895608.0, 7895608.0 1.89
BXD39/TyJ m 4658171.0 0.0   1   0.0 0.0 4658171.0, 4658171.0 -0.26
BXD40/TyJ m 5982291.0 0.0   1   0.0 0.0 5982291.0, 5982291.0 0.62
BXD42/TyJ m 7139534.0 0.0   1   0.0 0.0 7139534.0, 7139534.0 1.38
BXD5/TyJ m 4769678.0 0.0   1   0.0 0.0 4769678.0, 4769678.0 -0.19
BXD6/TyJ m 5436488.0 0.0   1   0.0 0.0 5436488.0, 5436488.0 0.25
BXD8/TyJ m 4595802.0 0.0   1   0.0 0.0 4595802.0, 4595802.0 -0.31
BXD9/TyJ m 4149056.0 0.0   1   0.0 0.0 4149056.0, 4149056.0 -0.6
BXH10/TyJ m 10093116.0 0.0   1   0.0 0.0 10093116.0, 10093116.0 3.35
BXH19/TyJ m 3829879.0 0.0   1   0.0 0.0 3829879.0, 3829879.0 -0.81
BXH20/KccJ m 3907570.0 0.0   1   0.0 0.0 3907570.0, 3907570.0 -0.76
BXH22/KccJ m 6255804.0 0.0   1   0.0 0.0 6255804.0, 6255804.0 0.8
BXH2/TyJ m 5327855.0 0.0   1   0.0 0.0 5327855.0, 5327855.0 0.18
BXH4/TyJ m 7388848.0 1410673.0   2   997496.0 0.191 6391352.0, 8386344.0 1.55
BXH6/TyJ m 4980040.0 0.0   1   0.0 0.0 4980040.0, 4980040.0 -0.05
BXH7/TyJ m 7036500.0 0.0   1   0.0 0.0 7036500.0, 7036500.0 1.32
BXH8/TyJ m 4197045.0 0.0   1   0.0 0.0 4197045.0, 4197045.0 -0.57
BXH9/TyJ m 2786950.0 0.0   1   0.0 0.0 2786950.0, 2786950.0 -1.51
C3H/HeJ m 4846256.0 146046.0   2   103270.0 0.0301 4742986.0, 4949526.0 -0.14
C57BL/6J m 5178422.0 563186.0   5 251864.0 0.109 4399386.0, 5938002.0 0.08
C57L/J m 5587550.0 0.0   1   0.0 0.0 5587550.0, 5587550.0 0.35
C58/J m 5219056.0 0.0   1   0.0 0.0 5219056.0, 5219056.0 0.11
CAST/EiJ m 5998616.0 0.0   1   0.0 0.0 5998616.0, 5998616.0 0.63
CBA/J m 7429296.0 0.0   1   0.0 0.0 7429296.0, 7429296.0 1.58
CE/J m 2545730.0 0.0   1   0.0 0.0 2545730.0, 2545730.0 -1.67
CXB11/HiAJ m 4202427.0 751830.0   2   531624.0 0.179 3670803.0, 4734050.0 -0.57
CXB12/HiAJ m 4225727.0 868759.0   2   614305.0 0.206 3611422.0, 4840032.0 -0.55
CXB13/HiAJ m 4946494.0 1393607.0   3 804599.0 0.282 3665786.0, 6430638.0 -0.07
CXB1/ByJ m 6345105.0 811553.0   3 468550.0 0.128 5466646.0, 7066912.0 0.86
CXB2/ByJ m 3355914.0 923914.0   3 533422.0 0.275 2390154.0, 4231346.0 -1.13
CXB3/ByJ m 3463724.0 391182.0   2   276608.0 0.113 3187116.0, 3740332.0 -1.06
CXB4/ByJ m 4183672.0 98188.0   2   69429.0 0.0235 4114243.0, 4253102.0 -0.58
CXB6/ByJ m 5735642.0 1624729.0   3 938038.0 0.283 3941404.0, 7107395.0 0.45
CXB7/ByJ m 4021062.0 153217.0   2   108341.0 0.0381 3912721.0, 4129403.0 -0.69
CXB8/HiAJ m 4678935.0 1106437.0   3 638802.0 0.236 3634426.0, 5838336.0 -0.25
CXB9/HiAJ m 4836316.0 1087347.0   3 627780.0 0.225 3944295.0, 6047537.0 -0.15
DBA/2J m 3107900.0 736191.0   4 368096.0 0.237 2306237.0, 4077570.0 -1.29
FVB/NJ m 4769074.0 0.0   1   0.0 0.0 4769074.0, 4769074.0 -0.19
I/LnJ m 6139976.0 0.0   1   0.0 0.0 6139976.0, 6139976.0 0.72
KK/HlJ m 4596407.0 0.0   1   0.0 0.0 4596407.0, 4596407.0 -0.3
LG/J m 3269634.0 0.0   1   0.0 0.0 3269634.0, 3269634.0 -1.19
LP/J m 2801099.0 0.0   1   0.0 0.0 2801099.0, 2801099.0 -1.5
MA/MyJ m 4763496.0 0.0   1   0.0 0.0 4763496.0, 4763496.0 -0.19
NOD/ShiLtJ m 4892831.0 0.0   1   0.0 0.0 4892831.0, 4892831.0 -0.11
NON/ShiLtJ m 4157032.0 0.0   1   0.0 0.0 4157032.0, 4157032.0 -0.6
NZW/LacJ m 6932976.0 0.0   1   0.0 0.0 6932976.0, 6932976.0 1.25
PL/J m 4659190.0 0.0   1   0.0 0.0 4659190.0, 4659190.0 -0.26
RIIIS/J m 4963184.0 0.0   1   0.0 0.0 4963184.0, 4963184.0 -0.06
SEA/GnJ m 5889463.0 0.0   1   0.0 0.0 5889463.0, 5889463.0 0.55
SJL/J m 6046784.0 0.0   1   0.0 0.0 6046784.0, 6046784.0 0.66
SM/J m 6231207.0 0.0   1   0.0 0.0 6231207.0, 6231207.0 0.78
SWR/J m 3626909.0 0.0   1   0.0 0.0 3626909.0, 3626909.0 -0.95


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 4831158.0 702133.2188 6258064.3788 3404251.6212
AXB19b/PgnJ m 6725843.75 702133.2188 8152750.1288 5298937.3712
AXB24/PgnJ m 5488722.5 702133.2188 6915628.8788 4061816.1212
BALB/cJ m 3287349.0333 573289.3725 4452413.2129 2122284.8537
BXA16/PgnJ m 4794650.4 702133.2188 6221556.7788 3367744.0212
BXD19/TyJ m 5257477.75 702133.2188 6684384.1288 3830571.3712
BXD28/TyJ m 4486847.25 702133.2188 5913753.6288 3059940.8712
BXH4/TyJ m 7388848.0 702133.2188 8815754.3788 5961941.6212
C3H/HeJ m 4846256.0 702133.2188 6273162.3788 3419349.6212
C57BL/6J m 5178422.0 444068.0385 6080876.833 4275967.167
CXB11/HiAJ m 4202426.75 702133.2188 5629333.1288 2775520.3712
CXB12/HiAJ m 4225727.25 702133.2188 5652633.6288 2798820.8712
CXB13/HiAJ m 4946494.4333 573289.3725 6111558.6129 3781430.2537
CXB1/ByJ m 6345105.0 573289.3725 7510169.1796 5180040.8204
CXB2/ByJ m 3355913.9333 573289.3725 4520978.1129 2190849.7537
CXB3/ByJ m 3463724.15 702133.2188 4890630.5288 2036817.7712
CXB4/ByJ m 4183672.25 702133.2188 5610578.6288 2756765.8712
CXB6/ByJ m 5735642.1 573289.3725 6900706.2796 4570577.9204
CXB7/ByJ m 4021061.9 702133.2188 5447968.2788 2594155.5212
CXB8/HiAJ m 4678935.4333 573289.3725 5843999.6129 3513871.2537
CXB9/HiAJ m 4836315.6 573289.3725 6001379.7796 3671251.4204
DBA/2J m 3107899.625 496483.1603 4116874.8016 2098924.4484




  GWAS USING LINEAR MIXED MODELS