Phenotype measure:   HMDPpheno7   glycolylneuraminate

ID, description, units MPD:50249   glycolylneuraminate   N-glycolylneuraminate (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   100 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno7 - N-glycolylneuraminate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested100 strains
Mean of the strain means146692   None
Median of the strain means65196   None
SD of the strain means± 745083
Coefficient of variation (CV)5.08
Min–max range of strain means8074   –   7515754   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 11517895349.2725 548471207.1082 1.2868 0.2523
Residuals 33 14065478963.3813 426226635.254


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 60762.0 0.0   1   0.0 0.0 60762.0, 60762.0 -0.12
A/J m 60193.0 5336.0   2   3773.0 0.0887 56419.0, 63966.0 -0.12
AKR/J m 67346.0 0.0   1   0.0 0.0 67346.0, 67346.0 -0.11
AXB10/PgnJ m 55775.0 0.0   1   0.0 0.0 55775.0, 55775.0 -0.12
AXB12/PgnJ m 54640.0 0.0   1   0.0 0.0 54640.0, 54640.0 -0.12
AXB13/PgnJ m 63943.0 0.0   1   0.0 0.0 63943.0, 63943.0 -0.11
AXB15/PgnJ m 80006.0 0.0   1   0.0 0.0 80006.0, 80006.0 -0.09
AXB19a/PgnJ m 68690.0 0.0   1   0.0 0.0 68690.0, 68690.0 -0.1
AXB19b/PgnJ m 93467.0 52037.0   2   36796.0 0.557 56672.0, 130263.0 -0.07
AXB19/PgnJ m 77849.0 0.0   1   0.0 0.0 77849.0, 77849.0 -0.09
AXB1/PgnJ m 121810.0 0.0   1   0.0 0.0 121810.0, 121810.0 -0.03
AXB23/PgnJ m 54114.0 0.0   1   0.0 0.0 54114.0, 54114.0 -0.12
AXB24/PgnJ m 73523.0 11244.0   2   7951.0 0.153 65572.0, 81474.0 -0.1
AXB2/PgnJ m 69155.0 0.0   1   0.0 0.0 69155.0, 69155.0 -0.1
AXB4/PgnJ m 45176.0 0.0   1   0.0 0.0 45176.0, 45176.0 -0.14
AXB8/PgnJ m 61821.0 0.0   1   0.0 0.0 61821.0, 61821.0 -0.11
BALB/cJ m 77966.0 19412.0   3 11207.0 0.249 58120.0, 96912.0 -0.09
BTBR T+ Itpr3tf/J m 75741.0 0.0   1   0.0 0.0 75741.0, 75741.0 -0.1
BUB/BnJ m 37341.0 0.0   1   0.0 0.0 37341.0, 37341.0 -0.15
BXA11/PgnJ m 103982.0 0.0   1   0.0 0.0 103982.0, 103982.0 -0.06
BXA12/PgnJ m 52611.0 0.0   1   0.0 0.0 52611.0, 52611.0 -0.13
BXA13/PgnJ m 79646.0 0.0   1   0.0 0.0 79646.0, 79646.0 -0.09
BXA14/PgnJ m 239747.0 0.0   1   0.0 0.0 239747.0, 239747.0 0.12
BXA16/PgnJ m 71795.0 77.2   2   54.6 0.00108 71740.0, 71849.0 -0.1
BXA1/PgnJ m 82371.0 0.0   1   0.0 0.0 82371.0, 82371.0 -0.09
BXA24/PgnJ m 130881.0 0.0   1   0.0 0.0 130881.0, 130881.0 -0.02
BXA25/PgnJ m 61475.0 0.0   1   0.0 0.0 61475.0, 61475.0 -0.11
BXA26/PgnJ m 57951.0 0.0   1   0.0 0.0 57951.0, 57951.0 -0.12
BXA2/PgnJ m 62778.0 0.0   1   0.0 0.0 62778.0, 62778.0 -0.11
BXA4/PgnJ m 72493.0 0.0   1   0.0 0.0 72493.0, 72493.0 -0.1
BXA7/PgnJ m 68399.0 0.0   1   0.0 0.0 68399.0, 68399.0 -0.11
BXA8/PgnJ m 63748.0 0.0   1   0.0 0.0 63748.0, 63748.0 -0.11
BXD11/TyJ m 51142.0 0.0   1   0.0 0.0 51142.0, 51142.0 -0.13
BXD12/TyJ m 86495.0 0.0   1   0.0 0.0 86495.0, 86495.0 -0.08
BXD13/TyJ m 42167.0 0.0   1   0.0 0.0 42167.0, 42167.0 -0.14
BXD14/TyJ m 139175.0 0.0   1   0.0 0.0 139175.0, 139175.0 -0.01
BXD15/TyJ m 94218.0 0.0   1   0.0 0.0 94218.0, 94218.0 -0.07
BXD18/TyJ m 87919.0 0.0   1   0.0 0.0 87919.0, 87919.0 -0.08
BXD19/TyJ m 61284.0 17065.0   2   12067.0 0.278 49216.0, 73351.0 -0.11
BXD1/TyJ m 65617.0 0.0   1   0.0 0.0 65617.0, 65617.0 -0.11
BXD20/TyJ m 63435.0 0.0   1   0.0 0.0 63435.0, 63435.0 -0.11
BXD21/TyJ m 8074.0 0.0   1   0.0 0.0 8074.0, 8074.0 -0.19
BXD22/TyJ m 44695.0 0.0   1   0.0 0.0 44695.0, 44695.0 -0.14
BXD24/TyJ m 54674.0 0.0   1   0.0 0.0 54674.0, 54674.0 -0.12
BXD24/TyJ-Cep290rd16/J m 52871.0 0.0   1   0.0 0.0 52871.0, 52871.0 -0.13
BXD28/TyJ m 62445.0 16925.0   2   11968.0 0.271 50477.0, 74413.0 -0.11
BXD29-Tlr4lps-2J/J m 63952.0 0.0   1   0.0 0.0 63952.0, 63952.0 -0.11
BXD2/TyJ m 116316.0 0.0   1   0.0 0.0 116316.0, 116316.0 -0.04
BXD32/TyJ m 93820.0 0.0   1   0.0 0.0 93820.0, 93820.0 -0.07
BXD33/TyJ m 41581.0 0.0   1   0.0 0.0 41581.0, 41581.0 -0.14
BXD36/TyJ m 85393.0 0.0   1   0.0 0.0 85393.0, 85393.0 -0.08
BXD38/TyJ m 60309.0 0.0   1   0.0 0.0 60309.0, 60309.0 -0.12
BXD39/TyJ m 52632.0 0.0   1   0.0 0.0 52632.0, 52632.0 -0.13
BXD40/TyJ m 70010.0 0.0   1   0.0 0.0 70010.0, 70010.0 -0.1
BXD42/TyJ m 46274.0 0.0   1   0.0 0.0 46274.0, 46274.0 -0.13
BXD5/TyJ m 32640.0 0.0   1   0.0 0.0 32640.0, 32640.0 -0.15
BXD6/TyJ m 79983.0 0.0   1   0.0 0.0 79983.0, 79983.0 -0.09
BXD8/TyJ m 111208.0 0.0   1   0.0 0.0 111208.0, 111208.0 -0.05
BXH10/TyJ m 52694.0 0.0   1   0.0 0.0 52694.0, 52694.0 -0.13
BXH19/TyJ m 60187.0 0.0   1   0.0 0.0 60187.0, 60187.0 -0.12
BXH20/KccJ m 117375.0 0.0   1   0.0 0.0 117375.0, 117375.0 -0.04
BXH22/KccJ m 66002.0 0.0   1   0.0 0.0 66002.0, 66002.0 -0.11
BXH2/TyJ m 67625.0 0.0   1   0.0 0.0 67625.0, 67625.0 -0.11
BXH4/TyJ m 73704.0 6483.0   2   4584.0 0.088 69120.0, 78288.0 -0.1
BXH6/TyJ m 131252.0 0.0   1   0.0 0.0 131252.0, 131252.0 -0.02
BXH7/TyJ m 80595.0 0.0   1   0.0 0.0 80595.0, 80595.0 -0.09
BXH8/TyJ m 72776.0 0.0   1   0.0 0.0 72776.0, 72776.0 -0.1
BXH9/TyJ m 95942.0 0.0   1   0.0 0.0 95942.0, 95942.0 -0.07
C3H/HeJ m 68736.0 15541.0   2   10989.0 0.226 57747.0, 79725.0 -0.1
C57BL/6J m 91688.0 13691.0   5 6123.0 0.149 72756.0, 105568.0 -0.07
C57L/J m 55150.0 0.0   1   0.0 0.0 55150.0, 55150.0 -0.12
C58/J m 235083.0 0.0   1   0.0 0.0 235083.0, 235083.0 0.12
CAST/EiJ m 60574.0 0.0   1   0.0 0.0 60574.0, 60574.0 -0.12
CBA/J m 46972.0 0.0   1   0.0 0.0 46972.0, 46972.0 -0.13
CE/J m 46856.0 0.0   1   0.0 0.0 46856.0, 46856.0 -0.13
CXB11/HiAJ m 62290.0 5144.0   2   3637.0 0.0826 58653.0, 65928.0 -0.11
CXB12/HiAJ m 64774.0 28601.0   2   20224.0 0.442 44550.0, 84998.0 -0.11
CXB13/HiAJ m 58123.0 22672.0   3 13089.0 0.39 32052.0, 73213.0 -0.12
CXB1/ByJ m 64398.0 15349.0   3 8862.0 0.238 47213.0, 76744.0 -0.11
CXB2/ByJ m 79807.0 28694.0   3 16567.0 0.36 59689.0, 112665.0 -0.09
CXB3/ByJ m 80811.0 21441.0   2   15161.0 0.265 65649.0, 95972.0 -0.09
CXB4/ByJ m 64187.0 19908.0   2   14077.0 0.31 50110.0, 78264.0 -0.11
CXB6/ByJ m 48870.0 32758.0   3 18913.0 0.67 11462.0, 72425.0 -0.13
CXB7/ByJ m 71253.0 7015.0   2   4960.0 0.0985 66293.0, 76214.0 -0.1
CXB8/HiAJ m 97462.0 11275.0   3 6510.0 0.116 88579.0, 110146.0 -0.07
CXB9/HiAJ m 63217.0 25368.0   3 14646.0 0.401 41522.0, 91110.0 -0.11
DBA/2J m 42081.0 11290.0   3 6518.0 0.268 31717.0, 54111.0 -0.14
FVB/NJ m 63238.0 0.0   1   0.0 0.0 63238.0, 63238.0 -0.11
I/LnJ m 108606.0 0.0   1   0.0 0.0 108606.0, 108606.0 -0.05
KK/HlJ m 100326.0 0.0   1   0.0 0.0 100326.0, 100326.0 -0.06
LG/J m 54976.0 0.0   1   0.0 0.0 54976.0, 54976.0 -0.12
LP/J m 33965.0 0.0   1   0.0 0.0 33965.0, 33965.0 -0.15
MA/MyJ m 71776.0 0.0   1   0.0 0.0 71776.0, 71776.0 -0.1
NOD/ShiLtJ m 40752.0 0.0   1   0.0 0.0 40752.0, 40752.0 -0.14
NZW/LacJ m 69530.0 0.0   1   0.0 0.0 69530.0, 69530.0 -0.1
PL/J m 34783.0 0.0   1   0.0 0.0 34783.0, 34783.0 -0.15
RIIIS/J m 35239.0 0.0   1   0.0 0.0 35239.0, 35239.0 -0.15
SEA/GnJ m 31057.0 0.0   1   0.0 0.0 31057.0, 31057.0 -0.16
SM/J m 7515754.0 0.0   1   0.0 0.0 7515754.0, 7515754.0 9.89
SWR/J m 73155.0 0.0   1   0.0 0.0 73155.0, 73155.0 -0.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 60192.55 14598.4012 89893.2206 30491.8794
AXB19b/PgnJ m 93467.2 14598.4012 123167.8706 63766.5294
AXB24/PgnJ m 73523.15 14598.4012 103223.8206 43822.4794
BALB/cJ m 77965.8667 11919.5447 102216.3626 53715.3707
BXA16/PgnJ m 71794.8 14598.4012 101495.4706 42094.1294
BXD19/TyJ m 61283.6 14598.4012 90984.2706 31582.9294
BXD28/TyJ m 62445.1 14598.4012 92145.7706 32744.4294
BXH4/TyJ m 73704.1 14598.4012 103404.7706 44003.4294
C3H/HeJ m 68736.0 14598.4012 98436.6706 39035.3294
C57BL/6J m 91688.12 9232.8396 110472.4734 72903.7666
CXB11/HiAJ m 62290.3 14598.4012 91990.9706 32589.6294
CXB12/HiAJ m 64773.85 14598.4012 94474.5206 35073.1794
CXB13/HiAJ m 58123.0333 11919.5447 82373.5293 33872.5374
CXB1/ByJ m 64398.5 11919.5447 88648.996 40148.004
CXB2/ByJ m 79806.8667 11919.5447 104057.3626 55556.3707
CXB3/ByJ m 80810.65 14598.4012 110511.3206 51109.9794
CXB4/ByJ m 64187.4 14598.4012 93888.0706 34486.7294
CXB6/ByJ m 48870.4 11919.5447 73120.896 24619.904
CXB7/ByJ m 71253.4 14598.4012 100954.0706 41552.7294
CXB8/HiAJ m 97461.7 11919.5447 121712.196 73211.204
CXB9/HiAJ m 63217.2333 11919.5447 87467.7293 38966.7374
DBA/2J m 42081.3667 11919.5447 66331.8626 17830.8707




  GWAS USING LINEAR MIXED MODELS