Phenotype measure:   HMDPpheno7   glucopyranoside

ID, description, units MPD:50248   glucopyranoside   methyl-alpha-glucopyranoside (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   105 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno7 - methyl-alpha-glucopyranoside (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested105 strains
Mean of the strain means184339   None
Median of the strain means172555   None
SD of the strain means± 83101
Coefficient of variation (CV)0.451
Min–max range of strain means29449   –   420317   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 334820440017.487 15943830477.0232 1.5886 0.112
Residuals 34 341232952544.548 10036263310.1338


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 74719.0 0.0   1   0.0 0.0 74719.0, 74719.0 -1.32
A/J m 118063.0 54616.0   2   38619.0 0.463 79444.0, 156682.0 -0.8
AKR/J m 145857.0 0.0   1   0.0 0.0 145857.0, 145857.0 -0.46
AXB10/PgnJ m 238217.0 0.0   1   0.0 0.0 238217.0, 238217.0 0.65
AXB12/PgnJ m 179777.0 0.0   1   0.0 0.0 179777.0, 179777.0 -0.05
AXB13/PgnJ m 293811.0 0.0   1   0.0 0.0 293811.0, 293811.0 1.32
AXB15/PgnJ m 78051.0 0.0   1   0.0 0.0 78051.0, 78051.0 -1.28
AXB19a/PgnJ m 170970.0 0.0   1   0.0 0.0 170970.0, 170970.0 -0.16
AXB19b/PgnJ m 224652.0 36036.0   2   25481.0 0.16 199170.0, 250133.0 0.49
AXB19/PgnJ m 143577.0 0.0   1   0.0 0.0 143577.0, 143577.0 -0.49
AXB1/PgnJ m 168354.0 0.0   1   0.0 0.0 168354.0, 168354.0 -0.19
AXB23/PgnJ m 261988.0 0.0   1   0.0 0.0 261988.0, 261988.0 0.93
AXB24/PgnJ m 87680.0 24393.0   2   17249.0 0.278 70431.0, 104928.0 -1.16
AXB2/PgnJ m 223797.0 0.0   1   0.0 0.0 223797.0, 223797.0 0.47
AXB4/PgnJ m 102121.0 0.0   1   0.0 0.0 102121.0, 102121.0 -0.99
AXB5/PgnJ m 175576.0 0.0   1   0.0 0.0 175576.0, 175576.0 -0.11
AXB6/PgnJ m 255741.0 0.0   1   0.0 0.0 255741.0, 255741.0 0.86
AXB8/PgnJ m 228356.0 0.0   1   0.0 0.0 228356.0, 228356.0 0.53
BALB/cJ m 195939.0 79284.0   3 45775.0 0.405 119769.0, 278009.0 0.14
BTBR T+ Itpr3tf/J m 118307.0 0.0   1   0.0 0.0 118307.0, 118307.0 -0.79
BUB/BnJ m 57615.0 0.0   1   0.0 0.0 57615.0, 57615.0 -1.52
BXA11/PgnJ m 92013.0 0.0   1   0.0 0.0 92013.0, 92013.0 -1.11
BXA12/PgnJ m 252105.0 0.0   1   0.0 0.0 252105.0, 252105.0 0.82
BXA13/PgnJ m 242995.0 0.0   1   0.0 0.0 242995.0, 242995.0 0.71
BXA14/PgnJ m 124622.0 0.0   1   0.0 0.0 124622.0, 124622.0 -0.72
BXA16/PgnJ m 244973.0 20850.0   2   14743.0 0.0851 230230.0, 259717.0 0.73
BXA1/PgnJ m 166896.0 0.0   1   0.0 0.0 166896.0, 166896.0 -0.21
BXA24/PgnJ m 206026.0 0.0   1   0.0 0.0 206026.0, 206026.0 0.26
BXA25/PgnJ m 147680.0 0.0   1   0.0 0.0 147680.0, 147680.0 -0.44
BXA26/PgnJ m 252194.0 0.0   1   0.0 0.0 252194.0, 252194.0 0.82
BXA2/PgnJ m 161858.0 0.0   1   0.0 0.0 161858.0, 161858.0 -0.27
BXA4/PgnJ m 244560.0 0.0   1   0.0 0.0 244560.0, 244560.0 0.72
BXA7/PgnJ m 104932.0 0.0   1   0.0 0.0 104932.0, 104932.0 -0.96
BXA8/PgnJ m 96950.0 0.0   1   0.0 0.0 96950.0, 96950.0 -1.05
BXD11/TyJ m 139169.0 0.0   1   0.0 0.0 139169.0, 139169.0 -0.54
BXD12/TyJ m 321637.0 0.0   1   0.0 0.0 321637.0, 321637.0 1.65
BXD13/TyJ m 56144.0 0.0   1   0.0 0.0 56144.0, 56144.0 -1.54
BXD14/TyJ m 117838.0 0.0   1   0.0 0.0 117838.0, 117838.0 -0.8
BXD15/TyJ m 238554.0 0.0   1   0.0 0.0 238554.0, 238554.0 0.65
BXD18/TyJ m 220617.0 0.0   1   0.0 0.0 220617.0, 220617.0 0.44
BXD19/TyJ m 301107.0 113180.0   2   80030.0 0.376 221077.0, 381137.0 1.41
BXD1/TyJ m 261750.0 0.0   1   0.0 0.0 261750.0, 261750.0 0.93
BXD20/TyJ m 217709.0 0.0   1   0.0 0.0 217709.0, 217709.0 0.4
BXD21/TyJ m 420317.0 0.0   1   0.0 0.0 420317.0, 420317.0 2.84
BXD22/TyJ m 174065.0 0.0   1   0.0 0.0 174065.0, 174065.0 -0.12
BXD24/TyJ m 173209.0 0.0   1   0.0 0.0 173209.0, 173209.0 -0.13
BXD24/TyJ-Cep290rd16/J m 155716.0 0.0   1   0.0 0.0 155716.0, 155716.0 -0.34
BXD28/TyJ m 149742.0 323.0   2   229.0 0.00216 149514.0, 149971.0 -0.42
BXD29-Tlr4lps-2J/J m 315763.0 0.0   1   0.0 0.0 315763.0, 315763.0 1.58
BXD2/TyJ m 267140.0 0.0   1   0.0 0.0 267140.0, 267140.0 1.0
BXD32/TyJ m 172300.0 0.0   1   0.0 0.0 172300.0, 172300.0 -0.14
BXD33/TyJ m 133671.0 0.0   1   0.0 0.0 133671.0, 133671.0 -0.61
BXD34/TyJ m 273113.0 0.0   1   0.0 0.0 273113.0, 273113.0 1.07
BXD36/TyJ m 199924.0 0.0   1   0.0 0.0 199924.0, 199924.0 0.19
BXD38/TyJ m 254301.0 0.0   1   0.0 0.0 254301.0, 254301.0 0.84
BXD39/TyJ m 117269.0 0.0   1   0.0 0.0 117269.0, 117269.0 -0.81
BXD40/TyJ m 172555.0 0.0   1   0.0 0.0 172555.0, 172555.0 -0.14
BXD42/TyJ m 148350.0 0.0   1   0.0 0.0 148350.0, 148350.0 -0.43
BXD5/TyJ m 110744.0 0.0   1   0.0 0.0 110744.0, 110744.0 -0.89
BXD6/TyJ m 257159.0 0.0   1   0.0 0.0 257159.0, 257159.0 0.88
BXD8/TyJ m 201390.0 0.0   1   0.0 0.0 201390.0, 201390.0 0.21
BXD9/TyJ m 243466.0 0.0   1   0.0 0.0 243466.0, 243466.0 0.71
BXH10/TyJ m 237826.0 0.0   1   0.0 0.0 237826.0, 237826.0 0.64
BXH19/TyJ m 374092.0 0.0   1   0.0 0.0 374092.0, 374092.0 2.28
BXH20/KccJ m 93754.0 0.0   1   0.0 0.0 93754.0, 93754.0 -1.09
BXH22/KccJ m 403274.0 0.0   1   0.0 0.0 403274.0, 403274.0 2.63
BXH2/TyJ m 125294.0 0.0   1   0.0 0.0 125294.0, 125294.0 -0.71
BXH4/TyJ m 220135.0 39890.0   2   28206.0 0.181 191929.0, 248342.0 0.43
BXH6/TyJ m 157023.0 0.0   1   0.0 0.0 157023.0, 157023.0 -0.33
BXH7/TyJ m 228002.0 0.0   1   0.0 0.0 228002.0, 228002.0 0.53
BXH8/TyJ m 94662.0 0.0   1   0.0 0.0 94662.0, 94662.0 -1.08
BXH9/TyJ m 115749.0 0.0   1   0.0 0.0 115749.0, 115749.0 -0.83
C3H/HeJ m 106986.0 51450.0   2   36381.0 0.481 70605.0, 143366.0 -0.93
C57BL/6J m 280526.0 63127.0   5 28231.0 0.225 205551.0, 352522.0 1.16
C57L/J m 335232.0 0.0   1   0.0 0.0 335232.0, 335232.0 1.82
C58/J m 187111.0 0.0   1   0.0 0.0 187111.0, 187111.0 0.03
CAST/EiJ m 161019.0 0.0   1   0.0 0.0 161019.0, 161019.0 -0.28
CBA/J m 117345.0 0.0   1   0.0 0.0 117345.0, 117345.0 -0.81
CE/J m 244574.0 0.0   1   0.0 0.0 244574.0, 244574.0 0.72
CXB11/HiAJ m 97104.0 61800.0   2   43699.0 0.636 53405.0, 140803.0 -1.05
CXB12/HiAJ m 203753.0 61451.0   2   43453.0 0.302 160300.0, 247206.0 0.23
CXB13/HiAJ m 276554.0 218013.0   3 125870.0 0.788 66655.0, 501863.0 1.11
CXB1/ByJ m 338992.0 105962.0   3 61177.0 0.313 232862.0, 444785.0 1.86
CXB2/ByJ m 249979.0 191309.0   3 110452.0 0.765 94493.0, 463616.0 0.79
CXB3/ByJ m 215303.0 38062.0   2   26914.0 0.177 188389.0, 242217.0 0.37
CXB4/ByJ m 135437.0 14185.0   2   10031.0 0.105 125406.0, 145468.0 -0.59
CXB6/ByJ m 188084.0 102848.0   3 59379.0 0.547 78814.0, 283002.0 0.05
CXB7/ByJ m 154835.0 27302.0   2   19306.0 0.176 135529.0, 174140.0 -0.36
CXB8/HiAJ m 327603.0 154324.0   3 89099.0 0.471 200196.0, 499202.0 1.72
CXB9/HiAJ m 155823.0 93797.0   3 54154.0 0.602 54271.0, 239207.0 -0.34
DBA/2J m 94900.0 33039.0   4 16520.0 0.348 63724.0, 131638.0 -1.08
FVB/NJ m 29449.0 0.0   1   0.0 0.0 29449.0, 29449.0 -1.86
I/LnJ m 136427.0 0.0   1   0.0 0.0 136427.0, 136427.0 -0.58
LG/J m 121836.0 0.0   1   0.0 0.0 121836.0, 121836.0 -0.75
LP/J m 103159.0 0.0   1   0.0 0.0 103159.0, 103159.0 -0.98
MA/MyJ m 50265.0 0.0   1   0.0 0.0 50265.0, 50265.0 -1.61
NOD/ShiLtJ m 38238.0 0.0   1   0.0 0.0 38238.0, 38238.0 -1.76
NON/ShiLtJ m 117943.0 0.0   1   0.0 0.0 117943.0, 117943.0 -0.8
NZW/LacJ m 146907.0 0.0   1   0.0 0.0 146907.0, 146907.0 -0.45
PL/J m 70629.0 0.0   1   0.0 0.0 70629.0, 70629.0 -1.37
RIIIS/J m 45191.0 0.0   1   0.0 0.0 45191.0, 45191.0 -1.67
SEA/GnJ m 282009.0 0.0   1   0.0 0.0 282009.0, 282009.0 1.18
SJL/J m 177726.0 0.0   1   0.0 0.0 177726.0, 177726.0 -0.08
SM/J m 310236.0 0.0   1   0.0 0.0 310236.0, 310236.0 1.51
SWR/J m 108872.0 0.0   1   0.0 0.0 108872.0, 108872.0 -0.91


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 118062.8 70838.7723 262024.506 0.0
AXB19b/PgnJ m 224651.65 70838.7723 368613.356 80689.944
AXB24/PgnJ m 87679.8 70838.7723 231641.506 0.0
BALB/cJ m 195939.4667 57839.6153 313483.7074 78395.226
BXA16/PgnJ m 244973.35 70838.7723 388935.056 101011.644
BXD19/TyJ m 301106.85 70838.7723 445068.556 157145.144
BXD28/TyJ m 149742.15 70838.7723 293703.856 5780.444
BXH4/TyJ m 220135.3 70838.7723 364097.006 76173.594
C3H/HeJ m 106985.9 70838.7723 250947.606 0.0
C57BL/6J m 280525.94 44802.3734 371575.3173 189476.5627
CXB11/HiAJ m 97104.25 70838.7723 241065.956 0.0
CXB12/HiAJ m 203752.9 70838.7723 347714.606 59791.194
CXB13/HiAJ m 276553.9333 57839.6153 394098.174 159009.6926
CXB1/ByJ m 338992.4667 57839.6153 456536.7074 221448.226
CXB2/ByJ m 249978.9333 57839.6153 367523.174 132434.6926
CXB3/ByJ m 215302.85 70838.7723 359264.556 71341.144
CXB4/ByJ m 135437.0 70838.7723 279398.706 0.0
CXB6/ByJ m 188084.5 57839.6153 305628.7407 70540.2593
CXB7/ByJ m 154834.85 70838.7723 298796.556 10873.144
CXB8/HiAJ m 327603.4 57839.6153 445147.6407 210059.1593
CXB9/HiAJ m 155822.6333 57839.6153 273366.874 38278.3926
DBA/2J m 94900.075 50090.5762 196696.3735 0.0




  GWAS USING LINEAR MIXED MODELS