Project measure / variable:   HMDPpheno7   glycerol_phosphate

ID, description, units MPD:50247   glycerol_phosphate   glycerol 2-phosphate (16h fast), relative abundance    
Data set, strains HMDPpheno7   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


  STRAIN COMPARISON PLOT
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HMDPpheno7 - glycerol 2-phosphate (16h fast), relative abundance

BXD32/TyJBXH20/KccJBXH4/TyJC58/JBXD22/TyJBXH6/TyJBXD15/TyJBXA24/PgnJAKR/JBXD20/TyJRIIIS/JBXH22/KccJC3H/HeJBXD5/TyJBXD28/TyJSWR/JBXD19/TyJCXB9/HiAJBXD36/TyJAXB19/PgnJCXB2/ByJBXA2/PgnJCXB1/ByJBXD6/TyJBXD40/TyJBXD11/TyJCXB12/HiAJMA/MyJBXA16/PgnJCXB3/ByJCXB7/ByJBXH9/TyJBXH2/TyJBXD2/TyJBXH8/TyJBXD39/TyJBTBR T<+> Itpr3<tf>/JBALB/cJBXD24/TyJ-Cep290<rd16>/JBXD1/TyJBXA8/PgnJCXB13/HiAJBXD33/TyJBXA7/PgnJCE/JCAST/EiJBXA1/PgnJCXB4/ByJBXD18/TyJCXB8/HiAJPL/JBXH19/TyJLG/JNOD/ShiLtJ129X1/SvJBXD14/TyJAXB19b/PgnJBXA26/PgnJBUB/BnJBXD34/TyJCBA/JC57L/JAXB15/PgnJAXB10/PgnJBXD29-Tlr4<lps-2J>/JNZW/LacJBXD9/TyJAXB1/PgnJBXD21/TyJBXD13/TyJBXA14/PgnJBXA4/PgnJBXD12/TyJBXA13/PgnJCXB11/HiAJC57BL/6JAXB12/PgnJSM/JBXD24/TyJSEA/GnJBXA25/PgnJNON/ShiLtJCXB6/ByJAXB23/PgnJAXB19a/PgnJAXB13/PgnJA/JBXD42/TyJLP/JAXB24/PgnJI/LnJSJL/JBXH10/TyJAXB4/PgnJBXH7/TyJDBA/2JKK/HlJBXD8/TyJAXB8/PgnJAXB6/PgnJAXB5/PgnJBXA11/PgnJBXA12/PgnJAXB2/PgnJFVB/NJBXD38/TyJ (no units) 60,00080,000100,000120,000140,000160,000180,000200,000220,000240,000femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means131144   None
Median of the strain means128152   None
SD of the strain means± 33095
Coefficient of variation (CV)0.252
Min–max range of strain means63351   –   227950   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 41036838126.1993 1954135148.8666 2.2011 0.0197
Residuals 34 30184550000.4405 887780882.3659


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 106 (106)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 127804.0 0.0   1   0.0 0.0 127804.0, 127804.0 -0.1
A/J m 102968.0 9476.0   2   6701.0 0.092 96267.0, 109669.0 -0.85
AKR/J m 180210.0 0.0   1   0.0 0.0 180210.0, 180210.0 1.48
AXB10/PgnJ m 121212.0 0.0   1   0.0 0.0 121212.0, 121212.0 -0.3
AXB12/PgnJ m 109677.0 0.0   1   0.0 0.0 109677.0, 109677.0 -0.65
AXB13/PgnJ m 103103.0 0.0   1   0.0 0.0 103103.0, 103103.0 -0.85
AXB15/PgnJ m 122000.0 0.0   1   0.0 0.0 122000.0, 122000.0 -0.28
AXB19a/PgnJ m 104278.0 0.0   1   0.0 0.0 104278.0, 104278.0 -0.81
AXB19b/PgnJ m 125307.0 3168.0   2   2240.0 0.0253 123067.0, 127548.0 -0.18
AXB19/PgnJ m 156650.0 0.0   1   0.0 0.0 156650.0, 156650.0 0.77
AXB1/PgnJ m 118136.0 0.0   1   0.0 0.0 118136.0, 118136.0 -0.39
AXB23/PgnJ m 104792.0 0.0   1   0.0 0.0 104792.0, 104792.0 -0.8
AXB24/PgnJ m 101820.0 24496.0   2   17321.0 0.241 84499.0, 119142.0 -0.89
AXB2/PgnJ m 67508.0 0.0   1   0.0 0.0 67508.0, 67508.0 -1.92
AXB4/PgnJ m 99074.0 0.0   1   0.0 0.0 99074.0, 99074.0 -0.97
AXB5/PgnJ m 83620.0 0.0   1   0.0 0.0 83620.0, 83620.0 -1.44
AXB6/PgnJ m 88695.0 0.0   1   0.0 0.0 88695.0, 88695.0 -1.28
AXB8/PgnJ m 93318.0 0.0   1   0.0 0.0 93318.0, 93318.0 -1.14
BALB/cJ m 137796.0 16374.0   3 9453.0 0.119 121831.0, 154550.0 0.2
BTBR T+ Itpr3tf/J m 139175.0 0.0   1   0.0 0.0 139175.0, 139175.0 0.24
BUB/BnJ m 124311.0 0.0   1   0.0 0.0 124311.0, 124311.0 -0.21
BXA11/PgnJ m 77323.0 0.0   1   0.0 0.0 77323.0, 77323.0 -1.63
BXA12/PgnJ m 71007.0 0.0   1   0.0 0.0 71007.0, 71007.0 -1.82
BXA13/PgnJ m 111188.0 0.0   1   0.0 0.0 111188.0, 111188.0 -0.6
BXA14/PgnJ m 112272.0 0.0   1   0.0 0.0 112272.0, 112272.0 -0.57
BXA16/PgnJ m 148104.0 20431.0   2   14447.0 0.138 133657.0, 162551.0 0.51
BXA1/PgnJ m 133112.0 0.0   1   0.0 0.0 133112.0, 133112.0 0.06
BXA24/PgnJ m 192281.0 0.0   1   0.0 0.0 192281.0, 192281.0 1.85
BXA25/PgnJ m 107526.0 0.0   1   0.0 0.0 107526.0, 107526.0 -0.71
BXA26/PgnJ m 125230.0 0.0   1   0.0 0.0 125230.0, 125230.0 -0.18
BXA2/PgnJ m 156148.0 0.0   1   0.0 0.0 156148.0, 156148.0 0.76
BXA4/PgnJ m 112150.0 0.0   1   0.0 0.0 112150.0, 112150.0 -0.57
BXA7/PgnJ m 134425.0 0.0   1   0.0 0.0 134425.0, 134425.0 0.1
BXA8/PgnJ m 136648.0 0.0   1   0.0 0.0 136648.0, 136648.0 0.17
BXD11/TyJ m 150437.0 0.0   1   0.0 0.0 150437.0, 150437.0 0.58
BXD12/TyJ m 112112.0 0.0   1   0.0 0.0 112112.0, 112112.0 -0.58
BXD13/TyJ m 113439.0 0.0   1   0.0 0.0 113439.0, 113439.0 -0.53
BXD14/TyJ m 125320.0 0.0   1   0.0 0.0 125320.0, 125320.0 -0.18
BXD15/TyJ m 192780.0 0.0   1   0.0 0.0 192780.0, 192780.0 1.86
BXD18/TyJ m 131026.0 0.0   1   0.0 0.0 131026.0, 131026.0 0.0
BXD19/TyJ m 158130.0 19925.0   2   14089.0 0.126 144041.0, 172219.0 0.82
BXD1/TyJ m 137217.0 0.0   1   0.0 0.0 137217.0, 137217.0 0.18
BXD20/TyJ m 169718.0 0.0   1   0.0 0.0 169718.0, 169718.0 1.17
BXD21/TyJ m 113498.0 0.0   1   0.0 0.0 113498.0, 113498.0 -0.53
BXD22/TyJ m 205581.0 0.0   1   0.0 0.0 205581.0, 205581.0 2.25
BXD24/TyJ m 107865.0 0.0   1   0.0 0.0 107865.0, 107865.0 -0.7
BXD24/TyJ-Cep290rd16/J m 137790.0 0.0   1   0.0 0.0 137790.0, 137790.0 0.2
BXD28/TyJ m 163227.0 31804.0   2   22489.0 0.195 140738.0, 185716.0 0.97
BXD29-Tlr4lps-2J/J m 120067.0 0.0   1   0.0 0.0 120067.0, 120067.0 -0.33
BXD2/TyJ m 142785.0 0.0   1   0.0 0.0 142785.0, 142785.0 0.35
BXD32/TyJ m 227950.0 0.0   1   0.0 0.0 227950.0, 227950.0 2.93
BXD33/TyJ m 136036.0 0.0   1   0.0 0.0 136036.0, 136036.0 0.15
BXD34/TyJ m 123990.0 0.0   1   0.0 0.0 123990.0, 123990.0 -0.22
BXD36/TyJ m 156860.0 0.0   1   0.0 0.0 156860.0, 156860.0 0.78
BXD38/TyJ m 63351.0 0.0   1   0.0 0.0 63351.0, 63351.0 -2.05
BXD39/TyJ m 141366.0 0.0   1   0.0 0.0 141366.0, 141366.0 0.31
BXD40/TyJ m 152138.0 0.0   1   0.0 0.0 152138.0, 152138.0 0.63
BXD42/TyJ m 102628.0 0.0   1   0.0 0.0 102628.0, 102628.0 -0.86
BXD5/TyJ m 164792.0 0.0   1   0.0 0.0 164792.0, 164792.0 1.02
BXD6/TyJ m 153001.0 0.0   1   0.0 0.0 153001.0, 153001.0 0.66
BXD8/TyJ m 94394.0 0.0   1   0.0 0.0 94394.0, 94394.0 -1.11
BXD9/TyJ m 118197.0 0.0   1   0.0 0.0 118197.0, 118197.0 -0.39
BXH10/TyJ m 99521.0 0.0   1   0.0 0.0 99521.0, 99521.0 -0.96
BXH19/TyJ m 128501.0 0.0   1   0.0 0.0 128501.0, 128501.0 -0.08
BXH20/KccJ m 220642.0 0.0   1   0.0 0.0 220642.0, 220642.0 2.7
BXH22/KccJ m 168030.0 0.0   1   0.0 0.0 168030.0, 168030.0 1.11
BXH2/TyJ m 142920.0 0.0   1   0.0 0.0 142920.0, 142920.0 0.36
BXH4/TyJ m 218278.0 45448.0   2   32137.0 0.208 186141.0, 250415.0 2.63
BXH6/TyJ m 198344.0 0.0   1   0.0 0.0 198344.0, 198344.0 2.03
BXH7/TyJ m 97571.0 0.0   1   0.0 0.0 97571.0, 97571.0 -1.01
BXH8/TyJ m 142744.0 0.0   1   0.0 0.0 142744.0, 142744.0 0.35
BXH9/TyJ m 143153.0 0.0   1   0.0 0.0 143153.0, 143153.0 0.36
C3H/HeJ m 167480.0 56088.0   2   39660.0 0.335 127820.0, 207140.0 1.1
C57BL/6J m 110322.0 37939.0   5 16967.0 0.344 72302.0, 157624.0 -0.63
C57L/J m 122426.0 0.0   1   0.0 0.0 122426.0, 122426.0 -0.26
C58/J m 210287.0 0.0   1   0.0 0.0 210287.0, 210287.0 2.39
CAST/EiJ m 133294.0 0.0   1   0.0 0.0 133294.0, 133294.0 0.06
CBA/J m 122648.0 0.0   1   0.0 0.0 122648.0, 122648.0 -0.26
CE/J m 133976.0 0.0   1   0.0 0.0 133976.0, 133976.0 0.09
CXB11/HiAJ m 110967.0 2180.0   2   1542.0 0.0196 109425.0, 112508.0 -0.61
CXB12/HiAJ m 150172.0 21111.0   2   14928.0 0.141 135244.0, 165100.0 0.57
CXB13/HiAJ m 136492.0 41026.0   3 23686.0 0.301 96561.0, 178532.0 0.16
CXB1/ByJ m 154256.0 8192.0   3 4729.0 0.0531 147148.0, 163214.0 0.7
CXB2/ByJ m 156400.0 55101.0   3 31813.0 0.352 108702.0, 216716.0 0.76
CXB3/ByJ m 147840.0 2070.0   2   1464.0 0.014 146376.0, 149304.0 0.5
CXB4/ByJ m 132986.0 10900.0   2   7708.0 0.082 125278.0, 140694.0 0.06
CXB6/ByJ m 106601.0 19669.0   3 11356.0 0.185 91517.0, 128848.0 -0.74
CXB7/ByJ m 145767.0 64949.0   2   45926.0 0.446 99841.0, 191693.0 0.44
CXB8/HiAJ m 128769.0 17413.0   3 10053.0 0.135 111317.0, 146142.0 -0.07
CXB9/HiAJ m 158076.0 8961.0   3 5173.0 0.0567 150143.0, 167796.0 0.81
DBA/2J m 96943.0 9099.0   4 4549.0 0.0939 87920.0, 109564.0 -1.03
FVB/NJ m 66261.0 0.0   1   0.0 0.0 66261.0, 66261.0 -1.96
I/LnJ m 100521.0 0.0   1   0.0 0.0 100521.0, 100521.0 -0.93
KK/HlJ m 96891.0 0.0   1   0.0 0.0 96891.0, 96891.0 -1.03
LG/J m 128276.0 0.0   1   0.0 0.0 128276.0, 128276.0 -0.09
LP/J m 102617.0 0.0   1   0.0 0.0 102617.0, 102617.0 -0.86
MA/MyJ m 148715.0 0.0   1   0.0 0.0 148715.0, 148715.0 0.53
NOD/ShiLtJ m 128028.0 0.0   1   0.0 0.0 128028.0, 128028.0 -0.09
NON/ShiLtJ m 107418.0 0.0   1   0.0 0.0 107418.0, 107418.0 -0.72
NZW/LacJ m 119681.0 0.0   1   0.0 0.0 119681.0, 119681.0 -0.35
PL/J m 128757.0 0.0   1   0.0 0.0 128757.0, 128757.0 -0.07
RIIIS/J m 169129.0 0.0   1   0.0 0.0 169129.0, 169129.0 1.15
SEA/GnJ m 107724.0 0.0   1   0.0 0.0 107724.0, 107724.0 -0.71
SJL/J m 100430.0 0.0   1   0.0 0.0 100430.0, 100430.0 -0.93
SM/J m 108295.0 0.0   1   0.0 0.0 108295.0, 108295.0 -0.69
SWR/J m 158500.0 0.0   1   0.0 0.0 158500.0, 158500.0 0.83


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 102968.1 21068.7076 145784.8654 60151.3346
AXB19b/PgnJ m 125307.15 21068.7076 168123.9154 82490.3846
AXB24/PgnJ m 101820.4 21068.7076 144637.1654 59003.6346
BALB/cJ m 137795.9333 17202.5277 172755.6759 102836.1908
BXA16/PgnJ m 148103.9 21068.7076 190920.6654 105287.1346
BXD19/TyJ m 158129.8 21068.7076 200946.5654 115313.0346
BXD28/TyJ m 163227.4 21068.7076 206044.1654 120410.6346
BXH4/TyJ m 218278.0 21068.7076 261094.7654 175461.2346
C3H/HeJ m 167480.05 21068.7076 210296.8154 124663.2846
C57BL/6J m 110322.48 13325.0207 137402.1801 83242.7799
CXB11/HiAJ m 110966.8 21068.7076 153783.5654 68150.0346
CXB12/HiAJ m 150171.95 21068.7076 192988.7154 107355.1846
CXB13/HiAJ m 136492.4667 17202.5277 171452.2092 101532.7241
CXB1/ByJ m 154256.0667 17202.5277 189215.8092 119296.3241
CXB2/ByJ m 156400.3333 17202.5277 191360.0759 121440.5908
CXB3/ByJ m 147839.7 21068.7076 190656.4654 105022.9346
CXB4/ByJ m 132986.25 21068.7076 175803.0154 90169.4846
CXB6/ByJ m 106601.4 17202.5277 141561.1426 71641.6574
CXB7/ByJ m 145766.85 21068.7076 188583.6154 102950.0846
CXB8/HiAJ m 128768.6333 17202.5277 163728.3759 93808.8908
CXB9/HiAJ m 158076.4667 17202.5277 193036.2092 123116.7241
DBA/2J m 96942.975 14897.826 127219.0002 66666.9498




  GWAS USING LINEAR MIXED MODELS

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