Phenotype measure:   HMDPpheno7   glycerol_phosphate

ID, description, units MPD:50247   glycerol_phosphate   glycerol 2-phosphate (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno7 - glycerol 2-phosphate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means131144   None
Median of the strain means128152   None
SD of the strain means± 33095
Coefficient of variation (CV)0.252
Min–max range of strain means63351   –   227950   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 41036838126.1993 1954135148.8666 2.2011 0.0197
Residuals 34 30184550000.4405 887780882.3659


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 127804.0 0.0   1   0.0 0.0 127804.0, 127804.0 -0.1
A/J m 102968.0 9476.0   2   6701.0 0.092 96267.0, 109669.0 -0.85
AKR/J m 180210.0 0.0   1   0.0 0.0 180210.0, 180210.0 1.48
AXB10/PgnJ m 121212.0 0.0   1   0.0 0.0 121212.0, 121212.0 -0.3
AXB12/PgnJ m 109677.0 0.0   1   0.0 0.0 109677.0, 109677.0 -0.65
AXB13/PgnJ m 103103.0 0.0   1   0.0 0.0 103103.0, 103103.0 -0.85
AXB15/PgnJ m 122000.0 0.0   1   0.0 0.0 122000.0, 122000.0 -0.28
AXB19a/PgnJ m 104278.0 0.0   1   0.0 0.0 104278.0, 104278.0 -0.81
AXB19b/PgnJ m 125307.0 3168.0   2   2240.0 0.0253 123067.0, 127548.0 -0.18
AXB19/PgnJ m 156650.0 0.0   1   0.0 0.0 156650.0, 156650.0 0.77
AXB1/PgnJ m 118136.0 0.0   1   0.0 0.0 118136.0, 118136.0 -0.39
AXB23/PgnJ m 104792.0 0.0   1   0.0 0.0 104792.0, 104792.0 -0.8
AXB24/PgnJ m 101820.0 24496.0   2   17321.0 0.241 84499.0, 119142.0 -0.89
AXB2/PgnJ m 67508.0 0.0   1   0.0 0.0 67508.0, 67508.0 -1.92
AXB4/PgnJ m 99074.0 0.0   1   0.0 0.0 99074.0, 99074.0 -0.97
AXB5/PgnJ m 83620.0 0.0   1   0.0 0.0 83620.0, 83620.0 -1.44
AXB6/PgnJ m 88695.0 0.0   1   0.0 0.0 88695.0, 88695.0 -1.28
AXB8/PgnJ m 93318.0 0.0   1   0.0 0.0 93318.0, 93318.0 -1.14
BALB/cJ m 137796.0 16374.0   3 9453.0 0.119 121831.0, 154550.0 0.2
BTBR T+ Itpr3tf/J m 139175.0 0.0   1   0.0 0.0 139175.0, 139175.0 0.24
BUB/BnJ m 124311.0 0.0   1   0.0 0.0 124311.0, 124311.0 -0.21
BXA11/PgnJ m 77323.0 0.0   1   0.0 0.0 77323.0, 77323.0 -1.63
BXA12/PgnJ m 71007.0 0.0   1   0.0 0.0 71007.0, 71007.0 -1.82
BXA13/PgnJ m 111188.0 0.0   1   0.0 0.0 111188.0, 111188.0 -0.6
BXA14/PgnJ m 112272.0 0.0   1   0.0 0.0 112272.0, 112272.0 -0.57
BXA16/PgnJ m 148104.0 20431.0   2   14447.0 0.138 133657.0, 162551.0 0.51
BXA1/PgnJ m 133112.0 0.0   1   0.0 0.0 133112.0, 133112.0 0.06
BXA24/PgnJ m 192281.0 0.0   1   0.0 0.0 192281.0, 192281.0 1.85
BXA25/PgnJ m 107526.0 0.0   1   0.0 0.0 107526.0, 107526.0 -0.71
BXA26/PgnJ m 125230.0 0.0   1   0.0 0.0 125230.0, 125230.0 -0.18
BXA2/PgnJ m 156148.0 0.0   1   0.0 0.0 156148.0, 156148.0 0.76
BXA4/PgnJ m 112150.0 0.0   1   0.0 0.0 112150.0, 112150.0 -0.57
BXA7/PgnJ m 134425.0 0.0   1   0.0 0.0 134425.0, 134425.0 0.1
BXA8/PgnJ m 136648.0 0.0   1   0.0 0.0 136648.0, 136648.0 0.17
BXD11/TyJ m 150437.0 0.0   1   0.0 0.0 150437.0, 150437.0 0.58
BXD12/TyJ m 112112.0 0.0   1   0.0 0.0 112112.0, 112112.0 -0.58
BXD13/TyJ m 113439.0 0.0   1   0.0 0.0 113439.0, 113439.0 -0.53
BXD14/TyJ m 125320.0 0.0   1   0.0 0.0 125320.0, 125320.0 -0.18
BXD15/TyJ m 192780.0 0.0   1   0.0 0.0 192780.0, 192780.0 1.86
BXD18/TyJ m 131026.0 0.0   1   0.0 0.0 131026.0, 131026.0 0.0
BXD19/TyJ m 158130.0 19925.0   2   14089.0 0.126 144041.0, 172219.0 0.82
BXD1/TyJ m 137217.0 0.0   1   0.0 0.0 137217.0, 137217.0 0.18
BXD20/TyJ m 169718.0 0.0   1   0.0 0.0 169718.0, 169718.0 1.17
BXD21/TyJ m 113498.0 0.0   1   0.0 0.0 113498.0, 113498.0 -0.53
BXD22/TyJ m 205581.0 0.0   1   0.0 0.0 205581.0, 205581.0 2.25
BXD24/TyJ m 107865.0 0.0   1   0.0 0.0 107865.0, 107865.0 -0.7
BXD24/TyJ-Cep290rd16/J m 137790.0 0.0   1   0.0 0.0 137790.0, 137790.0 0.2
BXD28/TyJ m 163227.0 31804.0   2   22489.0 0.195 140738.0, 185716.0 0.97
BXD29-Tlr4lps-2J/J m 120067.0 0.0   1   0.0 0.0 120067.0, 120067.0 -0.33
BXD2/TyJ m 142785.0 0.0   1   0.0 0.0 142785.0, 142785.0 0.35
BXD32/TyJ m 227950.0 0.0   1   0.0 0.0 227950.0, 227950.0 2.93
BXD33/TyJ m 136036.0 0.0   1   0.0 0.0 136036.0, 136036.0 0.15
BXD34/TyJ m 123990.0 0.0   1   0.0 0.0 123990.0, 123990.0 -0.22
BXD36/TyJ m 156860.0 0.0   1   0.0 0.0 156860.0, 156860.0 0.78
BXD38/TyJ m 63351.0 0.0   1   0.0 0.0 63351.0, 63351.0 -2.05
BXD39/TyJ m 141366.0 0.0   1   0.0 0.0 141366.0, 141366.0 0.31
BXD40/TyJ m 152138.0 0.0   1   0.0 0.0 152138.0, 152138.0 0.63
BXD42/TyJ m 102628.0 0.0   1   0.0 0.0 102628.0, 102628.0 -0.86
BXD5/TyJ m 164792.0 0.0   1   0.0 0.0 164792.0, 164792.0 1.02
BXD6/TyJ m 153001.0 0.0   1   0.0 0.0 153001.0, 153001.0 0.66
BXD8/TyJ m 94394.0 0.0   1   0.0 0.0 94394.0, 94394.0 -1.11
BXD9/TyJ m 118197.0 0.0   1   0.0 0.0 118197.0, 118197.0 -0.39
BXH10/TyJ m 99521.0 0.0   1   0.0 0.0 99521.0, 99521.0 -0.96
BXH19/TyJ m 128501.0 0.0   1   0.0 0.0 128501.0, 128501.0 -0.08
BXH20/KccJ m 220642.0 0.0   1   0.0 0.0 220642.0, 220642.0 2.7
BXH22/KccJ m 168030.0 0.0   1   0.0 0.0 168030.0, 168030.0 1.11
BXH2/TyJ m 142920.0 0.0   1   0.0 0.0 142920.0, 142920.0 0.36
BXH4/TyJ m 218278.0 45448.0   2   32137.0 0.208 186141.0, 250415.0 2.63
BXH6/TyJ m 198344.0 0.0   1   0.0 0.0 198344.0, 198344.0 2.03
BXH7/TyJ m 97571.0 0.0   1   0.0 0.0 97571.0, 97571.0 -1.01
BXH8/TyJ m 142744.0 0.0   1   0.0 0.0 142744.0, 142744.0 0.35
BXH9/TyJ m 143153.0 0.0   1   0.0 0.0 143153.0, 143153.0 0.36
C3H/HeJ m 167480.0 56088.0   2   39660.0 0.335 127820.0, 207140.0 1.1
C57BL/6J m 110322.0 37939.0   5 16967.0 0.344 72302.0, 157624.0 -0.63
C57L/J m 122426.0 0.0   1   0.0 0.0 122426.0, 122426.0 -0.26
C58/J m 210287.0 0.0   1   0.0 0.0 210287.0, 210287.0 2.39
CAST/EiJ m 133294.0 0.0   1   0.0 0.0 133294.0, 133294.0 0.06
CBA/J m 122648.0 0.0   1   0.0 0.0 122648.0, 122648.0 -0.26
CE/J m 133976.0 0.0   1   0.0 0.0 133976.0, 133976.0 0.09
CXB11/HiAJ m 110967.0 2180.0   2   1542.0 0.0196 109425.0, 112508.0 -0.61
CXB12/HiAJ m 150172.0 21111.0   2   14928.0 0.141 135244.0, 165100.0 0.57
CXB13/HiAJ m 136492.0 41026.0   3 23686.0 0.301 96561.0, 178532.0 0.16
CXB1/ByJ m 154256.0 8192.0   3 4729.0 0.0531 147148.0, 163214.0 0.7
CXB2/ByJ m 156400.0 55101.0   3 31813.0 0.352 108702.0, 216716.0 0.76
CXB3/ByJ m 147840.0 2070.0   2   1464.0 0.014 146376.0, 149304.0 0.5
CXB4/ByJ m 132986.0 10900.0   2   7708.0 0.082 125278.0, 140694.0 0.06
CXB6/ByJ m 106601.0 19669.0   3 11356.0 0.185 91517.0, 128848.0 -0.74
CXB7/ByJ m 145767.0 64949.0   2   45926.0 0.446 99841.0, 191693.0 0.44
CXB8/HiAJ m 128769.0 17413.0   3 10053.0 0.135 111317.0, 146142.0 -0.07
CXB9/HiAJ m 158076.0 8961.0   3 5173.0 0.0567 150143.0, 167796.0 0.81
DBA/2J m 96943.0 9099.0   4 4549.0 0.0939 87920.0, 109564.0 -1.03
FVB/NJ m 66261.0 0.0   1   0.0 0.0 66261.0, 66261.0 -1.96
I/LnJ m 100521.0 0.0   1   0.0 0.0 100521.0, 100521.0 -0.93
KK/HlJ m 96891.0 0.0   1   0.0 0.0 96891.0, 96891.0 -1.03
LG/J m 128276.0 0.0   1   0.0 0.0 128276.0, 128276.0 -0.09
LP/J m 102617.0 0.0   1   0.0 0.0 102617.0, 102617.0 -0.86
MA/MyJ m 148715.0 0.0   1   0.0 0.0 148715.0, 148715.0 0.53
NOD/ShiLtJ m 128028.0 0.0   1   0.0 0.0 128028.0, 128028.0 -0.09
NON/ShiLtJ m 107418.0 0.0   1   0.0 0.0 107418.0, 107418.0 -0.72
NZW/LacJ m 119681.0 0.0   1   0.0 0.0 119681.0, 119681.0 -0.35
PL/J m 128757.0 0.0   1   0.0 0.0 128757.0, 128757.0 -0.07
RIIIS/J m 169129.0 0.0   1   0.0 0.0 169129.0, 169129.0 1.15
SEA/GnJ m 107724.0 0.0   1   0.0 0.0 107724.0, 107724.0 -0.71
SJL/J m 100430.0 0.0   1   0.0 0.0 100430.0, 100430.0 -0.93
SM/J m 108295.0 0.0   1   0.0 0.0 108295.0, 108295.0 -0.69
SWR/J m 158500.0 0.0   1   0.0 0.0 158500.0, 158500.0 0.83


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 102968.1 21068.7076 145784.8654 60151.3346
AXB19b/PgnJ m 125307.15 21068.7076 168123.9154 82490.3846
AXB24/PgnJ m 101820.4 21068.7076 144637.1654 59003.6346
BALB/cJ m 137795.9333 17202.5277 172755.6759 102836.1908
BXA16/PgnJ m 148103.9 21068.7076 190920.6654 105287.1346
BXD19/TyJ m 158129.8 21068.7076 200946.5654 115313.0346
BXD28/TyJ m 163227.4 21068.7076 206044.1654 120410.6346
BXH4/TyJ m 218278.0 21068.7076 261094.7654 175461.2346
C3H/HeJ m 167480.05 21068.7076 210296.8154 124663.2846
C57BL/6J m 110322.48 13325.0207 137402.1801 83242.7799
CXB11/HiAJ m 110966.8 21068.7076 153783.5654 68150.0346
CXB12/HiAJ m 150171.95 21068.7076 192988.7154 107355.1846
CXB13/HiAJ m 136492.4667 17202.5277 171452.2092 101532.7241
CXB1/ByJ m 154256.0667 17202.5277 189215.8092 119296.3241
CXB2/ByJ m 156400.3333 17202.5277 191360.0759 121440.5908
CXB3/ByJ m 147839.7 21068.7076 190656.4654 105022.9346
CXB4/ByJ m 132986.25 21068.7076 175803.0154 90169.4846
CXB6/ByJ m 106601.4 17202.5277 141561.1426 71641.6574
CXB7/ByJ m 145766.85 21068.7076 188583.6154 102950.0846
CXB8/HiAJ m 128768.6333 17202.5277 163728.3759 93808.8908
CXB9/HiAJ m 158076.4667 17202.5277 193036.2092 123116.7241
DBA/2J m 96942.975 14897.826 127219.0002 66666.9498




  GWAS USING LINEAR MIXED MODELS