Project measure / variable:   HMDPpheno7   phosphate

ID, description, units MPD:50246   phosphate   phosphate (16h fast), relative abundance    
Data set, strains HMDPpheno7   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno7 - phosphate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means389104278   None
Median of the strain means390987272   None
SD of the strain means± 24840850
Coefficient of variation (CV)0.0638
Min–max range of strain means325469568   –   441636768   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 1.91158356306652e+16 910277887174534.0 2.0111 0.0339
Residuals 34 1.53894112922174e+16 452629743888747.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 364654592.0 0.0   1   0.0 0.0 364654592.0, 364654592.0 -0.98
A/J m 390793968.0 5322534.0   2   3763600.0 0.0136 387030368.0, 394557568.0 0.07
AKR/J m 383533152.0 0.0   1   0.0 0.0 383533152.0, 383533152.0 -0.22
AXB10/PgnJ m 390100064.0 0.0   1   0.0 0.0 390100064.0, 390100064.0 0.04
AXB12/PgnJ m 328927168.0 0.0   1   0.0 0.0 328927168.0, 328927168.0 -2.42
AXB13/PgnJ m 356566624.0 0.0   1   0.0 0.0 356566624.0, 356566624.0 -1.31
AXB15/PgnJ m 387592640.0 0.0   1   0.0 0.0 387592640.0, 387592640.0 -0.06
AXB19a/PgnJ m 427404800.0 0.0   1   0.0 0.0 427404800.0, 427404800.0 1.54
AXB19b/PgnJ m 411524448.0 1876673.0   2   1327008.0 0.00456 410197440.0, 412851456.0 0.9
AXB19/PgnJ m 409668288.0 0.0   1   0.0 0.0 409668288.0, 409668288.0 0.83
AXB1/PgnJ m 430899712.0 0.0   1   0.0 0.0 430899712.0, 430899712.0 1.68
AXB23/PgnJ m 407145664.0 0.0   1   0.0 0.0 407145664.0, 407145664.0 0.73
AXB24/PgnJ m 359687952.0 69943269.0   2   49457360.0 0.194 310230592.0, 409145312.0 -1.18
AXB2/PgnJ m 360416448.0 0.0   1   0.0 0.0 360416448.0, 360416448.0 -1.15
AXB4/PgnJ m 391246176.0 0.0   1   0.0 0.0 391246176.0, 391246176.0 0.09
AXB5/PgnJ m 348007264.0 0.0   1   0.0 0.0 348007264.0, 348007264.0 -1.65
AXB6/PgnJ m 403765248.0 0.0   1   0.0 0.0 403765248.0, 403765248.0 0.59
AXB8/PgnJ m 346168256.0 0.0   1   0.0 0.0 346168256.0, 346168256.0 -1.73
BALB/cJ m 396049227.0 11069212.0   3 6390813.0 0.0279 386343328.0, 408104544.0 0.28
BTBR T+ Itpr3tf/J m 396871712.0 0.0   1   0.0 0.0 396871712.0, 396871712.0 0.31
BUB/BnJ m 382925248.0 0.0   1   0.0 0.0 382925248.0, 382925248.0 -0.25
BXA11/PgnJ m 377514496.0 0.0   1   0.0 0.0 377514496.0, 377514496.0 -0.47
BXA12/PgnJ m 346313632.0 0.0   1   0.0 0.0 346313632.0, 346313632.0 -1.72
BXA13/PgnJ m 410761152.0 0.0   1   0.0 0.0 410761152.0, 410761152.0 0.87
BXA14/PgnJ m 412299296.0 0.0   1   0.0 0.0 412299296.0, 412299296.0 0.93
BXA16/PgnJ m 363683024.0 35483931.0   2   25090928.0 0.0976 338592096.0, 388773952.0 -1.02
BXA1/PgnJ m 371727264.0 0.0   1   0.0 0.0 371727264.0, 371727264.0 -0.7
BXA24/PgnJ m 441636768.0 0.0   1   0.0 0.0 441636768.0, 441636768.0 2.11
BXA25/PgnJ m 368091200.0 0.0   1   0.0 0.0 368091200.0, 368091200.0 -0.85
BXA26/PgnJ m 376222816.0 0.0   1   0.0 0.0 376222816.0, 376222816.0 -0.52
BXA2/PgnJ m 394045056.0 0.0   1   0.0 0.0 394045056.0, 394045056.0 0.2
BXA4/PgnJ m 361571360.0 0.0   1   0.0 0.0 361571360.0, 361571360.0 -1.11
BXA7/PgnJ m 391180576.0 0.0   1   0.0 0.0 391180576.0, 391180576.0 0.08
BXA8/PgnJ m 369474048.0 0.0   1   0.0 0.0 369474048.0, 369474048.0 -0.79
BXD11/TyJ m 388606464.0 0.0   1   0.0 0.0 388606464.0, 388606464.0 -0.02
BXD12/TyJ m 417057568.0 0.0   1   0.0 0.0 417057568.0, 417057568.0 1.13
BXD13/TyJ m 400995008.0 0.0   1   0.0 0.0 400995008.0, 400995008.0 0.48
BXD14/TyJ m 404256896.0 0.0   1   0.0 0.0 404256896.0, 404256896.0 0.61
BXD15/TyJ m 390021632.0 0.0   1   0.0 0.0 390021632.0, 390021632.0 0.04
BXD18/TyJ m 382854528.0 0.0   1   0.0 0.0 382854528.0, 382854528.0 -0.25
BXD19/TyJ m 394234192.0 22597345.0   2   15978736.0 0.0573 378255456.0, 410212928.0 0.21
BXD1/TyJ m 415494816.0 0.0   1   0.0 0.0 415494816.0, 415494816.0 1.06
BXD20/TyJ m 399312768.0 0.0   1   0.0 0.0 399312768.0, 399312768.0 0.41
BXD21/TyJ m 363951328.0 0.0   1   0.0 0.0 363951328.0, 363951328.0 -1.01
BXD22/TyJ m 405817920.0 0.0   1   0.0 0.0 405817920.0, 405817920.0 0.67
BXD24/TyJ m 376303520.0 0.0   1   0.0 0.0 376303520.0, 376303520.0 -0.52
BXD24/TyJ-Cep290rd16/J m 372976192.0 0.0   1   0.0 0.0 372976192.0, 372976192.0 -0.65
BXD28/TyJ m 388856400.0 2186872.0   2   1546352.0 0.00562 387310048.0, 390402752.0 -0.01
BXD29-Tlr4lps-2J/J m 383795168.0 0.0   1   0.0 0.0 383795168.0, 383795168.0 -0.21
BXD2/TyJ m 402775424.0 0.0   1   0.0 0.0 402775424.0, 402775424.0 0.55
BXD32/TyJ m 408489504.0 0.0   1   0.0 0.0 408489504.0, 408489504.0 0.78
BXD33/TyJ m 430051328.0 0.0   1   0.0 0.0 430051328.0, 430051328.0 1.65
BXD34/TyJ m 368526016.0 0.0   1   0.0 0.0 368526016.0, 368526016.0 -0.83
BXD36/TyJ m 402215712.0 0.0   1   0.0 0.0 402215712.0, 402215712.0 0.53
BXD38/TyJ m 373078080.0 0.0   1   0.0 0.0 373078080.0, 373078080.0 -0.65
BXD39/TyJ m 368938464.0 0.0   1   0.0 0.0 368938464.0, 368938464.0 -0.81
BXD40/TyJ m 393291488.0 0.0   1   0.0 0.0 393291488.0, 393291488.0 0.17
BXD42/TyJ m 361233152.0 0.0   1   0.0 0.0 361233152.0, 361233152.0 -1.12
BXD5/TyJ m 400398752.0 0.0   1   0.0 0.0 400398752.0, 400398752.0 0.45
BXD6/TyJ m 392760192.0 0.0   1   0.0 0.0 392760192.0, 392760192.0 0.15
BXD8/TyJ m 343231200.0 0.0   1   0.0 0.0 343231200.0, 343231200.0 -1.85
BXD9/TyJ m 368394784.0 0.0   1   0.0 0.0 368394784.0, 368394784.0 -0.83
BXH10/TyJ m 325469568.0 0.0   1   0.0 0.0 325469568.0, 325469568.0 -2.56
BXH19/TyJ m 371769184.0 0.0   1   0.0 0.0 371769184.0, 371769184.0 -0.7
BXH20/KccJ m 438041792.0 0.0   1   0.0 0.0 438041792.0, 438041792.0 1.97
BXH22/KccJ m 421967776.0 0.0   1   0.0 0.0 421967776.0, 421967776.0 1.32
BXH2/TyJ m 429650848.0 0.0   1   0.0 0.0 429650848.0, 429650848.0 1.63
BXH4/TyJ m 431484720.0 8836527.0   2   6248368.0 0.0205 425236352.0, 437733088.0 1.71
BXH6/TyJ m 419899200.0 0.0   1   0.0 0.0 419899200.0, 419899200.0 1.24
BXH7/TyJ m 392010752.0 0.0   1   0.0 0.0 392010752.0, 392010752.0 0.12
BXH8/TyJ m 411541632.0 0.0   1   0.0 0.0 411541632.0, 411541632.0 0.9
BXH9/TyJ m 381029344.0 0.0   1   0.0 0.0 381029344.0, 381029344.0 -0.33
C3H/HeJ m 399970208.0 14211873.0   2   10049312.0 0.0355 389920896.0, 410019520.0 0.44
C57BL/6J m 407792992.0 17940295.0   5 8023144.0 0.044 390174528.0, 435371360.0 0.75
C57L/J m 378748896.0 0.0   1   0.0 0.0 378748896.0, 378748896.0 -0.42
C58/J m 402844608.0 0.0   1   0.0 0.0 402844608.0, 402844608.0 0.55
CAST/EiJ m 375811744.0 0.0   1   0.0 0.0 375811744.0, 375811744.0 -0.54
CBA/J m 349237056.0 0.0   1   0.0 0.0 349237056.0, 349237056.0 -1.6
CE/J m 378116736.0 0.0   1   0.0 0.0 378116736.0, 378116736.0 -0.44
CXB11/HiAJ m 388442768.0 36423693.0   2   25755440.0 0.0938 362687328.0, 414198208.0 -0.03
CXB12/HiAJ m 367053040.0 44535395.0   2   31491280.0 0.121 335561760.0, 398544320.0 -0.89
CXB13/HiAJ m 402387669.0 11251863.0   3 6496266.0 0.028 393082368.0, 414892896.0 0.53
CXB1/ByJ m 409646112.0 4460456.0   3 2575245.0 0.0109 405033888.0, 413937472.0 0.83
CXB2/ByJ m 385360800.0 9991921.0   3 5768838.0 0.0259 374016384.0, 392854176.0 -0.15
CXB3/ByJ m 422579712.0 25952923.0   2   18351488.0 0.0614 404228224.0, 440931200.0 1.35
CXB4/ByJ m 410797184.0 4761261.0   2   3366720.0 0.0116 407430464.0, 414163904.0 0.87
CXB6/ByJ m 361735264.0 17121161.0   3 9884907.0 0.0473 344662176.0, 378904096.0 -1.1
CXB7/ByJ m 408842880.0 12952658.0   2   9158912.0 0.0317 399683968.0, 418001792.0 0.79
CXB8/HiAJ m 408919200.0 18418997.0   3 10634213.0 0.045 388622112.0, 424570528.0 0.8
CXB9/HiAJ m 388700736.0 761633.0   3 439729.0 0.00196 388114752.0, 389561664.0 -0.02
DBA/2J m 376697624.0 17755071.0   4 8877536.0 0.0471 360213504.0, 401662016.0 -0.5
FVB/NJ m 416521984.0 0.0   1   0.0 0.0 416521984.0, 416521984.0 1.1
I/LnJ m 400275584.0 0.0   1   0.0 0.0 400275584.0, 400275584.0 0.45
KK/HlJ m 386752000.0 0.0   1   0.0 0.0 386752000.0, 386752000.0 -0.09
LG/J m 391231392.0 0.0   1   0.0 0.0 391231392.0, 391231392.0 0.09
LP/J m 372999072.0 0.0   1   0.0 0.0 372999072.0, 372999072.0 -0.65
MA/MyJ m 417270496.0 0.0   1   0.0 0.0 417270496.0, 417270496.0 1.13
NOD/ShiLtJ m 338704000.0 0.0   1   0.0 0.0 338704000.0, 338704000.0 -2.03
NON/ShiLtJ m 404492000.0 0.0   1   0.0 0.0 404492000.0, 404492000.0 0.62
NZW/LacJ m 333771136.0 0.0   1   0.0 0.0 333771136.0, 333771136.0 -2.23
PL/J m 423627424.0 0.0   1   0.0 0.0 423627424.0, 423627424.0 1.39
RIIIS/J m 408859424.0 0.0   1   0.0 0.0 408859424.0, 408859424.0 0.8
SEA/GnJ m 375025664.0 0.0   1   0.0 0.0 375025664.0, 375025664.0 -0.57
SJL/J m 365465952.0 0.0   1   0.0 0.0 365465952.0, 365465952.0 -0.95
SM/J m 392076320.0 0.0   1   0.0 0.0 392076320.0, 392076320.0 0.12
SWR/J m 415043136.0 0.0   1   0.0 0.0 415043136.0, 415043136.0 1.04


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 390793968.0 15043765.2183 421366577.2644 360221358.7356
AXB19b/PgnJ m 411524448.0 15043765.2183 442097057.2644 380951838.7356
AXB24/PgnJ m 359687952.0 15043765.2183 390260561.2644 329115342.7356
BALB/cJ m 396049226.6667 12283182.865 421011657.6011 371086795.7322
BXA16/PgnJ m 363683024.0 15043765.2183 394255633.2644 333110414.7356
BXD19/TyJ m 394234192.0 15043765.2183 424806801.2644 363661582.7356
BXD28/TyJ m 388856400.0 15043765.2183 419429009.2644 358283790.7356
BXH4/TyJ m 431484720.0 15043765.2183 462057329.2644 400912110.7356
C3H/HeJ m 399970208.0 15043765.2183 430542817.2644 369397598.7356
C57BL/6J m 407792992.0 9514512.535 427128807.858 388457176.142
CXB11/HiAJ m 388442768.0 15043765.2183 419015377.2644 357870158.7356
CXB12/HiAJ m 367053040.0 15043765.2183 397625649.2644 336480430.7356
CXB13/HiAJ m 402387669.3333 12283182.865 427350100.2678 377425238.3989
CXB1/ByJ m 409646112.0 12283182.865 434608542.9344 384683681.0656
CXB2/ByJ m 385360800.0 12283182.865 410323230.9344 360398369.0656
CXB3/ByJ m 422579712.0 15043765.2183 453152321.2644 392007102.7356
CXB4/ByJ m 410797184.0 15043765.2183 441369793.2644 380224574.7356
CXB6/ByJ m 361735264.0 12283182.865 386697694.9344 336772833.0656
CXB7/ByJ m 408842880.0 15043765.2183 439415489.2644 378270270.7356
CXB8/HiAJ m 408919200.0 12283182.865 433881630.9344 383956769.0656
CXB9/HiAJ m 388700736.0 12283182.865 413663166.9344 363738305.0656
DBA/2J m 376697624.0 10637548.4005 398315723.3294 355079524.6706




  GWAS USING LINEAR MIXED MODELS