Phenotype measure:   HMDPpheno7   succinylcarnitine

ID, description, units MPD:50243   succinylcarnitine   succinylcarnitine (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   93 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno7 - succinylcarnitine (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested93 strains
Mean of the strain means96367   None
Median of the strain means33259   None
SD of the strain means± 408533
Coefficient of variation (CV)4.24
Min–max range of strain means15351   –   2932842   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 20 7311677074.5328 365583853.7266 1.0829 0.4101
Residuals 32 10803051881.1442 337595371.2858


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 44557.0 0.0   1   0.0 0.0 44557.0, 44557.0 -0.13
A/J m 37100.0 17305.0   2   12236.0 0.466 24864.0, 49337.0 -0.15
AKR/J m 17797.0 0.0   1   0.0 0.0 17797.0, 17797.0 -0.19
AXB10/PgnJ m 46385.0 0.0   1   0.0 0.0 46385.0, 46385.0 -0.12
AXB12/PgnJ m 19645.0 0.0   1   0.0 0.0 19645.0, 19645.0 -0.19
AXB13/PgnJ m 33259.0 0.0   1   0.0 0.0 33259.0, 33259.0 -0.15
AXB19a/PgnJ m 20424.0 0.0   1   0.0 0.0 20424.0, 20424.0 -0.19
AXB19b/PgnJ m 30883.0 3185.0   2   2252.0 0.103 28631.0, 33136.0 -0.16
AXB1/PgnJ m 30788.0 0.0   1   0.0 0.0 30788.0, 30788.0 -0.16
AXB23/PgnJ m 31800.0 0.0   1   0.0 0.0 31800.0, 31800.0 -0.16
AXB24/PgnJ m 45041.0 29836.0   2   21097.0 0.662 23944.0, 66138.0 -0.13
AXB2/PgnJ m 21300.0 0.0   1   0.0 0.0 21300.0, 21300.0 -0.18
AXB5/PgnJ m 35534.0 0.0   1   0.0 0.0 35534.0, 35534.0 -0.15
AXB6/PgnJ m 24628.0 0.0   1   0.0 0.0 24628.0, 24628.0 -0.18
AXB8/PgnJ m 47567.0 0.0   1   0.0 0.0 47567.0, 47567.0 -0.12
BALB/cJ m 41605.0 21130.0   3 12199.0 0.508 25378.0, 65498.0 -0.13
BUB/BnJ m 56066.0 0.0   1   0.0 0.0 56066.0, 56066.0 -0.1
BXA11/PgnJ m 36611.0 0.0   1   0.0 0.0 36611.0, 36611.0 -0.15
BXA13/PgnJ m 28274.0 0.0   1   0.0 0.0 28274.0, 28274.0 -0.17
BXA14/PgnJ m 96324.0 0.0   1   0.0 0.0 96324.0, 96324.0 0.0
BXA16/PgnJ m 35376.0 5529.0   2   3910.0 0.156 31466.0, 39286.0 -0.15
BXA1/PgnJ m 33275.0 0.0   1   0.0 0.0 33275.0, 33275.0 -0.15
BXA24/PgnJ m 33240.0 0.0   1   0.0 0.0 33240.0, 33240.0 -0.15
BXA25/PgnJ m 25546.0 0.0   1   0.0 0.0 25546.0, 25546.0 -0.17
BXA26/PgnJ m 33277.0 0.0   1   0.0 0.0 33277.0, 33277.0 -0.15
BXA2/PgnJ m 56844.0 0.0   1   0.0 0.0 56844.0, 56844.0 -0.1
BXA4/PgnJ m 21436.0 0.0   1   0.0 0.0 21436.0, 21436.0 -0.18
BXA8/PgnJ m 21406.0 0.0   1   0.0 0.0 21406.0, 21406.0 -0.18
BXD14/TyJ m 51734.0 0.0   1   0.0 0.0 51734.0, 51734.0 -0.11
BXD15/TyJ m 16996.0 0.0   1   0.0 0.0 16996.0, 16996.0 -0.19
BXD18/TyJ m 26822.0 0.0   1   0.0 0.0 26822.0, 26822.0 -0.17
BXD19/TyJ m 28735.0 6397.0   2   4523.0 0.223 24212.0, 33259.0 -0.17
BXD1/TyJ m 32330.0 0.0   1   0.0 0.0 32330.0, 32330.0 -0.16
BXD21/TyJ m 32126.0 0.0   1   0.0 0.0 32126.0, 32126.0 -0.16
BXD22/TyJ m 27553.0 0.0   1   0.0 0.0 27553.0, 27553.0 -0.17
BXD24/TyJ m 25076.0 0.0   1   0.0 0.0 25076.0, 25076.0 -0.17
BXD24/TyJ-Cep290rd16/J m 15351.0 0.0   1   0.0 0.0 15351.0, 15351.0 -0.2
BXD28/TyJ m 47597.0 1687.0   2   1193.0 0.0354 46405.0, 48790.0 -0.12
BXD29-Tlr4lps-2J/J m 37088.0 0.0   1   0.0 0.0 37088.0, 37088.0 -0.15
BXD2/TyJ m 16518.0 0.0   1   0.0 0.0 16518.0, 16518.0 -0.2
BXD32/TyJ m 21055.0 0.0   1   0.0 0.0 21055.0, 21055.0 -0.18
BXD33/TyJ m 54088.0 0.0   1   0.0 0.0 54088.0, 54088.0 -0.1
BXD34/TyJ m 34771.0 0.0   1   0.0 0.0 34771.0, 34771.0 -0.15
BXD36/TyJ m 16216.0 0.0   1   0.0 0.0 16216.0, 16216.0 -0.2
BXD38/TyJ m 19076.0 0.0   1   0.0 0.0 19076.0, 19076.0 -0.19
BXD39/TyJ m 35367.0 0.0   1   0.0 0.0 35367.0, 35367.0 -0.15
BXD40/TyJ m 15951.0 0.0   1   0.0 0.0 15951.0, 15951.0 -0.2
BXD42/TyJ m 15726.0 0.0   1   0.0 0.0 15726.0, 15726.0 -0.2
BXD5/TyJ m 30814.0 0.0   1   0.0 0.0 30814.0, 30814.0 -0.16
BXD6/TyJ m 33733.0 0.0   1   0.0 0.0 33733.0, 33733.0 -0.15
BXD8/TyJ m 23600.0 0.0   1   0.0 0.0 23600.0, 23600.0 -0.18
BXD9/TyJ m 33259.0 0.0   1   0.0 0.0 33259.0, 33259.0 -0.15
BXH10/TyJ m 27679.0 0.0   1   0.0 0.0 27679.0, 27679.0 -0.17
BXH19/TyJ m 26627.0 0.0   1   0.0 0.0 26627.0, 26627.0 -0.17
BXH20/KccJ m 16170.0 0.0   1   0.0 0.0 16170.0, 16170.0 -0.2
BXH2/TyJ m 15865.0 0.0   1   0.0 0.0 15865.0, 15865.0 -0.2
BXH4/TyJ m 32852.0 0.0   1   0.0 0.0 32852.0, 32852.0 -0.16
BXH6/TyJ m 22324.0 0.0   1   0.0 0.0 22324.0, 22324.0 -0.18
BXH7/TyJ m 30348.0 0.0   1   0.0 0.0 30348.0, 30348.0 -0.16
BXH8/TyJ m 37983.0 0.0   1   0.0 0.0 37983.0, 37983.0 -0.14
BXH9/TyJ m 18499.0 0.0   1   0.0 0.0 18499.0, 18499.0 -0.19
C3H/HeJ m 22692.0 1228.0   2   868.0 0.0541 21824.0, 23560.0 -0.18
C57BL/6J m 36425.0 7375.0   5 3298.0 0.202 26980.0, 44545.0 -0.15
C58/J m 157539.0 0.0   1   0.0 0.0 157539.0, 157539.0 0.15
CAST/EiJ m 78086.0 0.0   1   0.0 0.0 78086.0, 78086.0 -0.04
CE/J m 56347.0 0.0   1   0.0 0.0 56347.0, 56347.0 -0.1
CXB11/HiAJ m 27467.0 4389.0   2   3103.0 0.16 24364.0, 30571.0 -0.17
CXB12/HiAJ m 36759.0 235.0   2   166.0 0.0064 36593.0, 36925.0 -0.15
CXB13/HiAJ m 43320.0 357.0   2   252.0 0.00824 43067.0, 43572.0 -0.13
CXB1/ByJ m 54454.0 17846.0   3 10303.0 0.328 43610.0, 75051.0 -0.1
CXB2/ByJ m 48383.0 16685.0   3 9633.0 0.345 33243.0, 66271.0 -0.12
CXB3/ByJ m 66806.0 6528.0   2   4616.0 0.0977 62190.0, 71422.0 -0.07
CXB4/ByJ m 36312.0 5400.0   2   3818.0 0.149 32494.0, 40131.0 -0.15
CXB6/ByJ m 49910.0 36042.0   3 20809.0 0.722 22868.0, 90828.0 -0.11
CXB7/ByJ m 45487.0 17404.0   2   12306.0 0.383 33180.0, 57793.0 -0.12
CXB8/HiAJ m 64436.0 43174.0   3 24926.0 0.67 20936.0, 107276.0 -0.08
CXB9/HiAJ m 59332.0 11173.0   3 6451.0 0.188 47976.0, 70313.0 -0.09
DBA/2J m 29442.0 9191.0   4 4595.0 0.312 16078.0, 36723.0 -0.16
FVB/NJ m 2731860.0 0.0   1   0.0 0.0 2731860.0, 2731860.0 6.45
I/LnJ m 30720.0 0.0   1   0.0 0.0 30720.0, 30720.0 -0.16
KK/HlJ m 18391.0 0.0   1   0.0 0.0 18391.0, 18391.0 -0.19
LG/J m 29357.0 0.0   1   0.0 0.0 29357.0, 29357.0 -0.16
LP/J m 28398.0 0.0   1   0.0 0.0 28398.0, 28398.0 -0.17
MA/MyJ m 42287.0 0.0   1   0.0 0.0 42287.0, 42287.0 -0.13
NOD/ShiLtJ m 47822.0 0.0   1   0.0 0.0 47822.0, 47822.0 -0.12
NON/ShiLtJ m 47211.0 0.0   1   0.0 0.0 47211.0, 47211.0 -0.12
NZW/LacJ m 23371.0 0.0   1   0.0 0.0 23371.0, 23371.0 -0.18
PL/J m 25117.0 0.0   1   0.0 0.0 25117.0, 25117.0 -0.17
RIIIS/J m 35680.0 0.0   1   0.0 0.0 35680.0, 35680.0 -0.15
SEA/GnJ m 36291.0 0.0   1   0.0 0.0 36291.0, 36291.0 -0.15
SJL/J m 2932842.0 0.0   1   0.0 0.0 2932842.0, 2932842.0 6.94
SM/J m 57608.0 0.0   1   0.0 0.0 57608.0, 57608.0 -0.09
SWR/J m 36105.0 0.0   1   0.0 0.0 36105.0, 36105.0 -0.15


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 37100.45 12992.2163 63564.7287 10636.1713
AXB19b/PgnJ m 30883.4 12992.2163 57347.6787 4419.1213
AXB24/PgnJ m 45041.25 12992.2163 71505.5287 18576.9713
BALB/cJ m 41605.2333 10608.1002 63213.2264 19997.2403
BXA16/PgnJ m 35375.8 12992.2163 61840.0787 8911.5213
BXD19/TyJ m 28735.35 12992.2163 55199.6287 2271.0713
BXD28/TyJ m 47597.2 12992.2163 74061.4787 21132.9213
C3H/HeJ m 22692.2 12992.2163 49156.4787 0.0
C57BL/6J m 36424.8 8216.9991 53162.2795 19687.3205
CXB11/HiAJ m 27467.35 12992.2163 53931.6287 1003.0713
CXB12/HiAJ m 36758.95 12992.2163 63223.2287 10294.6713
CXB13/HiAJ m 43319.8 12992.2163 69784.0787 16855.5213
CXB1/ByJ m 54453.6333 10608.1002 76061.6264 32845.6403
CXB2/ByJ m 48383.1333 10608.1002 69991.1264 26775.1403
CXB3/ByJ m 66805.9 12992.2163 93270.1787 40341.6213
CXB4/ByJ m 36312.4 12992.2163 62776.6787 9848.1213
CXB6/ByJ m 49910.1 10608.1002 71518.0931 28302.1069
CXB7/ByJ m 45486.75 12992.2163 71951.0287 19022.4713
CXB8/HiAJ m 64435.8667 10608.1002 86043.8597 42827.8736
CXB9/HiAJ m 59332.0 10608.1002 80939.9931 37724.0069
DBA/2J m 29441.525 9186.8843 48154.5959 10728.4541




  GWAS USING LINEAR MIXED MODELS