Project measure / variable:   HMDPpheno7   succinylcarnitine

ID, description, units MPD:50243   succinylcarnitine   succinylcarnitine (16h fast), relative abundance    
Data set, strains HMDPpheno7   HMDP   93 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno7 - succinylcarnitine (16h fast), relative abundance

SJL/JFVB/NJC58/JBXA14/PgnJCAST/EiJCXB3/ByJCXB8/HiAJCXB9/HiAJSM/JBXA2/PgnJCE/JBUB/BnJCXB1/ByJBXD33/TyJBXD14/TyJCXB6/ByJCXB2/ByJNOD/ShiLtJBXD28/TyJAXB8/PgnJNON/ShiLtJAXB10/PgnJCXB7/ByJAXB24/PgnJ129X1/SvJCXB13/HiAJMA/MyJBALB/cJBXH8/TyJA/JBXD29-Tlr4<lps-2J>/JCXB12/HiAJBXA11/PgnJC57BL/6JCXB4/ByJSEA/GnJSWR/JRIIIS/JAXB5/PgnJBXA16/PgnJBXD39/TyJBXD34/TyJBXD6/TyJBXA26/PgnJBXA1/PgnJAXB13/PgnJBXD9/TyJBXA24/PgnJBXH4/TyJBXD1/TyJBXD21/TyJAXB23/PgnJAXB19b/PgnJBXD5/TyJAXB1/PgnJI/LnJBXH7/TyJDBA/2JLG/JBXD19/TyJLP/JBXA13/PgnJBXH10/TyJBXD22/TyJCXB11/HiAJBXD18/TyJBXH19/TyJBXA25/PgnJPL/JBXD24/TyJAXB6/PgnJBXD8/TyJNZW/LacJC3H/HeJBXH6/TyJBXA4/PgnJBXA8/PgnJAXB2/PgnJBXD32/TyJAXB19a/PgnJAXB12/PgnJBXD38/TyJBXH9/TyJKK/HlJAKR/JBXD15/TyJBXD2/TyJBXD36/TyJBXH20/KccJBXD40/TyJBXH2/TyJBXD42/TyJBXD24/TyJ-Cep290<rd16>/J (no units) 0500,0001,000,0001,500,0002,000,0002,500,0003,000,000femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested93 strains
Mean of the strain means96367   None
Median of the strain means33259   None
SD of the strain means± 408533
Coefficient of variation (CV)4.24
Min–max range of strain means15351   –   2932842   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 20 7311677074.5328 365583853.7266 1.0829 0.4101
Residuals 32 10803051881.1442 337595371.2858


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 93 (93)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 44557.0 0.0   1   0.0 0.0 44557.0, 44557.0 -0.13
A/J m 37100.0 17305.0   2   12236.0 0.466 24864.0, 49337.0 -0.15
AKR/J m 17797.0 0.0   1   0.0 0.0 17797.0, 17797.0 -0.19
AXB10/PgnJ m 46385.0 0.0   1   0.0 0.0 46385.0, 46385.0 -0.12
AXB12/PgnJ m 19645.0 0.0   1   0.0 0.0 19645.0, 19645.0 -0.19
AXB13/PgnJ m 33259.0 0.0   1   0.0 0.0 33259.0, 33259.0 -0.15
AXB19a/PgnJ m 20424.0 0.0   1   0.0 0.0 20424.0, 20424.0 -0.19
AXB19b/PgnJ m 30883.0 3185.0   2   2252.0 0.103 28631.0, 33136.0 -0.16
AXB1/PgnJ m 30788.0 0.0   1   0.0 0.0 30788.0, 30788.0 -0.16
AXB23/PgnJ m 31800.0 0.0   1   0.0 0.0 31800.0, 31800.0 -0.16
AXB24/PgnJ m 45041.0 29836.0   2   21097.0 0.662 23944.0, 66138.0 -0.13
AXB2/PgnJ m 21300.0 0.0   1   0.0 0.0 21300.0, 21300.0 -0.18
AXB5/PgnJ m 35534.0 0.0   1   0.0 0.0 35534.0, 35534.0 -0.15
AXB6/PgnJ m 24628.0 0.0   1   0.0 0.0 24628.0, 24628.0 -0.18
AXB8/PgnJ m 47567.0 0.0   1   0.0 0.0 47567.0, 47567.0 -0.12
BALB/cJ m 41605.0 21130.0   3 12199.0 0.508 25378.0, 65498.0 -0.13
BUB/BnJ m 56066.0 0.0   1   0.0 0.0 56066.0, 56066.0 -0.1
BXA11/PgnJ m 36611.0 0.0   1   0.0 0.0 36611.0, 36611.0 -0.15
BXA13/PgnJ m 28274.0 0.0   1   0.0 0.0 28274.0, 28274.0 -0.17
BXA14/PgnJ m 96324.0 0.0   1   0.0 0.0 96324.0, 96324.0 0.0
BXA16/PgnJ m 35376.0 5529.0   2   3910.0 0.156 31466.0, 39286.0 -0.15
BXA1/PgnJ m 33275.0 0.0   1   0.0 0.0 33275.0, 33275.0 -0.15
BXA24/PgnJ m 33240.0 0.0   1   0.0 0.0 33240.0, 33240.0 -0.15
BXA25/PgnJ m 25546.0 0.0   1   0.0 0.0 25546.0, 25546.0 -0.17
BXA26/PgnJ m 33277.0 0.0   1   0.0 0.0 33277.0, 33277.0 -0.15
BXA2/PgnJ m 56844.0 0.0   1   0.0 0.0 56844.0, 56844.0 -0.1
BXA4/PgnJ m 21436.0 0.0   1   0.0 0.0 21436.0, 21436.0 -0.18
BXA8/PgnJ m 21406.0 0.0   1   0.0 0.0 21406.0, 21406.0 -0.18
BXD14/TyJ m 51734.0 0.0   1   0.0 0.0 51734.0, 51734.0 -0.11
BXD15/TyJ m 16996.0 0.0   1   0.0 0.0 16996.0, 16996.0 -0.19
BXD18/TyJ m 26822.0 0.0   1   0.0 0.0 26822.0, 26822.0 -0.17
BXD19/TyJ m 28735.0 6397.0   2   4523.0 0.223 24212.0, 33259.0 -0.17
BXD1/TyJ m 32330.0 0.0   1   0.0 0.0 32330.0, 32330.0 -0.16
BXD21/TyJ m 32126.0 0.0   1   0.0 0.0 32126.0, 32126.0 -0.16
BXD22/TyJ m 27553.0 0.0   1   0.0 0.0 27553.0, 27553.0 -0.17
BXD24/TyJ m 25076.0 0.0   1   0.0 0.0 25076.0, 25076.0 -0.17
BXD24/TyJ-Cep290rd16/J m 15351.0 0.0   1   0.0 0.0 15351.0, 15351.0 -0.2
BXD28/TyJ m 47597.0 1687.0   2   1193.0 0.0354 46405.0, 48790.0 -0.12
BXD29-Tlr4lps-2J/J m 37088.0 0.0   1   0.0 0.0 37088.0, 37088.0 -0.15
BXD2/TyJ m 16518.0 0.0   1   0.0 0.0 16518.0, 16518.0 -0.2
BXD32/TyJ m 21055.0 0.0   1   0.0 0.0 21055.0, 21055.0 -0.18
BXD33/TyJ m 54088.0 0.0   1   0.0 0.0 54088.0, 54088.0 -0.1
BXD34/TyJ m 34771.0 0.0   1   0.0 0.0 34771.0, 34771.0 -0.15
BXD36/TyJ m 16216.0 0.0   1   0.0 0.0 16216.0, 16216.0 -0.2
BXD38/TyJ m 19076.0 0.0   1   0.0 0.0 19076.0, 19076.0 -0.19
BXD39/TyJ m 35367.0 0.0   1   0.0 0.0 35367.0, 35367.0 -0.15
BXD40/TyJ m 15951.0 0.0   1   0.0 0.0 15951.0, 15951.0 -0.2
BXD42/TyJ m 15726.0 0.0   1   0.0 0.0 15726.0, 15726.0 -0.2
BXD5/TyJ m 30814.0 0.0   1   0.0 0.0 30814.0, 30814.0 -0.16
BXD6/TyJ m 33733.0 0.0   1   0.0 0.0 33733.0, 33733.0 -0.15
BXD8/TyJ m 23600.0 0.0   1   0.0 0.0 23600.0, 23600.0 -0.18
BXD9/TyJ m 33259.0 0.0   1   0.0 0.0 33259.0, 33259.0 -0.15
BXH10/TyJ m 27679.0 0.0   1   0.0 0.0 27679.0, 27679.0 -0.17
BXH19/TyJ m 26627.0 0.0   1   0.0 0.0 26627.0, 26627.0 -0.17
BXH20/KccJ m 16170.0 0.0   1   0.0 0.0 16170.0, 16170.0 -0.2
BXH2/TyJ m 15865.0 0.0   1   0.0 0.0 15865.0, 15865.0 -0.2
BXH4/TyJ m 32852.0 0.0   1   0.0 0.0 32852.0, 32852.0 -0.16
BXH6/TyJ m 22324.0 0.0   1   0.0 0.0 22324.0, 22324.0 -0.18
BXH7/TyJ m 30348.0 0.0   1   0.0 0.0 30348.0, 30348.0 -0.16
BXH8/TyJ m 37983.0 0.0   1   0.0 0.0 37983.0, 37983.0 -0.14
BXH9/TyJ m 18499.0 0.0   1   0.0 0.0 18499.0, 18499.0 -0.19
C3H/HeJ m 22692.0 1228.0   2   868.0 0.0541 21824.0, 23560.0 -0.18
C57BL/6J m 36425.0 7375.0   5 3298.0 0.202 26980.0, 44545.0 -0.15
C58/J m 157539.0 0.0   1   0.0 0.0 157539.0, 157539.0 0.15
CAST/EiJ m 78086.0 0.0   1   0.0 0.0 78086.0, 78086.0 -0.04
CE/J m 56347.0 0.0   1   0.0 0.0 56347.0, 56347.0 -0.1
CXB11/HiAJ m 27467.0 4389.0   2   3103.0 0.16 24364.0, 30571.0 -0.17
CXB12/HiAJ m 36759.0 235.0   2   166.0 0.0064 36593.0, 36925.0 -0.15
CXB13/HiAJ m 43320.0 357.0   2   252.0 0.00824 43067.0, 43572.0 -0.13
CXB1/ByJ m 54454.0 17846.0   3 10303.0 0.328 43610.0, 75051.0 -0.1
CXB2/ByJ m 48383.0 16685.0   3 9633.0 0.345 33243.0, 66271.0 -0.12
CXB3/ByJ m 66806.0 6528.0   2   4616.0 0.0977 62190.0, 71422.0 -0.07
CXB4/ByJ m 36312.0 5400.0   2   3818.0 0.149 32494.0, 40131.0 -0.15
CXB6/ByJ m 49910.0 36042.0   3 20809.0 0.722 22868.0, 90828.0 -0.11
CXB7/ByJ m 45487.0 17404.0   2   12306.0 0.383 33180.0, 57793.0 -0.12
CXB8/HiAJ m 64436.0 43174.0   3 24926.0 0.67 20936.0, 107276.0 -0.08
CXB9/HiAJ m 59332.0 11173.0   3 6451.0 0.188 47976.0, 70313.0 -0.09
DBA/2J m 29442.0 9191.0   4 4595.0 0.312 16078.0, 36723.0 -0.16
FVB/NJ m 2731860.0 0.0   1   0.0 0.0 2731860.0, 2731860.0 6.45
I/LnJ m 30720.0 0.0   1   0.0 0.0 30720.0, 30720.0 -0.16
KK/HlJ m 18391.0 0.0   1   0.0 0.0 18391.0, 18391.0 -0.19
LG/J m 29357.0 0.0   1   0.0 0.0 29357.0, 29357.0 -0.16
LP/J m 28398.0 0.0   1   0.0 0.0 28398.0, 28398.0 -0.17
MA/MyJ m 42287.0 0.0   1   0.0 0.0 42287.0, 42287.0 -0.13
NOD/ShiLtJ m 47822.0 0.0   1   0.0 0.0 47822.0, 47822.0 -0.12
NON/ShiLtJ m 47211.0 0.0   1   0.0 0.0 47211.0, 47211.0 -0.12
NZW/LacJ m 23371.0 0.0   1   0.0 0.0 23371.0, 23371.0 -0.18
PL/J m 25117.0 0.0   1   0.0 0.0 25117.0, 25117.0 -0.17
RIIIS/J m 35680.0 0.0   1   0.0 0.0 35680.0, 35680.0 -0.15
SEA/GnJ m 36291.0 0.0   1   0.0 0.0 36291.0, 36291.0 -0.15
SJL/J m 2932842.0 0.0   1   0.0 0.0 2932842.0, 2932842.0 6.94
SM/J m 57608.0 0.0   1   0.0 0.0 57608.0, 57608.0 -0.09
SWR/J m 36105.0 0.0   1   0.0 0.0 36105.0, 36105.0 -0.15


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 37100.45 12992.2163 63564.7287 10636.1713
AXB19b/PgnJ m 30883.4 12992.2163 57347.6787 4419.1213
AXB24/PgnJ m 45041.25 12992.2163 71505.5287 18576.9713
BALB/cJ m 41605.2333 10608.1002 63213.2264 19997.2403
BXA16/PgnJ m 35375.8 12992.2163 61840.0787 8911.5213
BXD19/TyJ m 28735.35 12992.2163 55199.6287 2271.0713
BXD28/TyJ m 47597.2 12992.2163 74061.4787 21132.9213
C3H/HeJ m 22692.2 12992.2163 49156.4787 0.0
C57BL/6J m 36424.8 8216.9991 53162.2795 19687.3205
CXB11/HiAJ m 27467.35 12992.2163 53931.6287 1003.0713
CXB12/HiAJ m 36758.95 12992.2163 63223.2287 10294.6713
CXB13/HiAJ m 43319.8 12992.2163 69784.0787 16855.5213
CXB1/ByJ m 54453.6333 10608.1002 76061.6264 32845.6403
CXB2/ByJ m 48383.1333 10608.1002 69991.1264 26775.1403
CXB3/ByJ m 66805.9 12992.2163 93270.1787 40341.6213
CXB4/ByJ m 36312.4 12992.2163 62776.6787 9848.1213
CXB6/ByJ m 49910.1 10608.1002 71518.0931 28302.1069
CXB7/ByJ m 45486.75 12992.2163 71951.0287 19022.4713
CXB8/HiAJ m 64435.8667 10608.1002 86043.8597 42827.8736
CXB9/HiAJ m 59332.0 10608.1002 80939.9931 37724.0069
DBA/2J m 29441.525 9186.8843 48154.5959 10728.4541




  GWAS USING LINEAR MIXED MODELS

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