Phenotype measure:   HMDPpheno7   fumarate

ID, description, units MPD:50241   fumarate   fumarate (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

HMDPpheno7 - fumarate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1028463   None
Median of the strain means976284   None
SD of the strain means± 305337
Coefficient of variation (CV)0.297
Min–max range of strain means238151   –   2218413   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 2483887572586.12 118280360599.339 2.7214 0.0046
Residuals 34 1477757719969.99 43463462352.0586


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1099120.0 0.0   1   0.0 0.0 1099120.0, 1099120.0 0.23
A/J m 723928.0 93561.0   2   66158.0 0.129 657770.0, 790086.0 -1.0
AKR/J m 800360.0 0.0   1   0.0 0.0 800360.0, 800360.0 -0.75
AXB10/PgnJ m 982841.0 0.0   1   0.0 0.0 982841.0, 982841.0 -0.15
AXB12/PgnJ m 1061694.0 0.0   1   0.0 0.0 1061694.0, 1061694.0 0.11
AXB13/PgnJ m 1240066.0 0.0   1   0.0 0.0 1240066.0, 1240066.0 0.69
AXB15/PgnJ m 876130.0 0.0   1   0.0 0.0 876130.0, 876130.0 -0.5
AXB19a/PgnJ m 1241858.0 0.0   1   0.0 0.0 1241858.0, 1241858.0 0.7
AXB19b/PgnJ m 1568144.0 261838.0   2   185148.0 0.167 1382997.0, 1753292.0 1.77
AXB19/PgnJ m 1073645.0 0.0   1   0.0 0.0 1073645.0, 1073645.0 0.15
AXB1/PgnJ m 950840.0 0.0   1   0.0 0.0 950840.0, 950840.0 -0.25
AXB23/PgnJ m 776013.0 0.0   1   0.0 0.0 776013.0, 776013.0 -0.83
AXB24/PgnJ m 917450.0 295364.0   2   208854.0 0.322 708596.0, 1126303.0 -0.36
AXB2/PgnJ m 758996.0 0.0   1   0.0 0.0 758996.0, 758996.0 -0.88
AXB4/PgnJ m 1301106.0 0.0   1   0.0 0.0 1301106.0, 1301106.0 0.89
AXB5/PgnJ m 883169.0 0.0   1   0.0 0.0 883169.0, 883169.0 -0.48
AXB6/PgnJ m 1542478.0 0.0   1   0.0 0.0 1542478.0, 1542478.0 1.68
AXB8/PgnJ m 1185114.0 0.0   1   0.0 0.0 1185114.0, 1185114.0 0.51
BALB/cJ m 992707.0 266893.0   3 154091.0 0.269 710298.0, 1240755.0 -0.12
BTBR T+ Itpr3tf/J m 768131.0 0.0   1   0.0 0.0 768131.0, 768131.0 -0.85
BUB/BnJ m 1093499.0 0.0   1   0.0 0.0 1093499.0, 1093499.0 0.21
BXA11/PgnJ m 1158636.0 0.0   1   0.0 0.0 1158636.0, 1158636.0 0.43
BXA12/PgnJ m 504197.0 0.0   1   0.0 0.0 504197.0, 504197.0 -1.72
BXA13/PgnJ m 969726.0 0.0   1   0.0 0.0 969726.0, 969726.0 -0.19
BXA14/PgnJ m 1788664.0 0.0   1   0.0 0.0 1788664.0, 1788664.0 2.49
BXA16/PgnJ m 1015634.0 80675.0   2   57046.0 0.0794 958588.0, 1072680.0 -0.04
BXA1/PgnJ m 840993.0 0.0   1   0.0 0.0 840993.0, 840993.0 -0.61
BXA24/PgnJ m 1052164.0 0.0   1   0.0 0.0 1052164.0, 1052164.0 0.08
BXA25/PgnJ m 517038.0 0.0   1   0.0 0.0 517038.0, 517038.0 -1.67
BXA26/PgnJ m 1119267.0 0.0   1   0.0 0.0 1119267.0, 1119267.0 0.3
BXA2/PgnJ m 1066566.0 0.0   1   0.0 0.0 1066566.0, 1066566.0 0.12
BXA4/PgnJ m 238151.0 0.0   1   0.0 0.0 238151.0, 238151.0 -2.59
BXA7/PgnJ m 941897.0 0.0   1   0.0 0.0 941897.0, 941897.0 -0.28
BXA8/PgnJ m 807964.0 0.0   1   0.0 0.0 807964.0, 807964.0 -0.72
BXD11/TyJ m 833559.0 0.0   1   0.0 0.0 833559.0, 833559.0 -0.64
BXD12/TyJ m 1395708.0 0.0   1   0.0 0.0 1395708.0, 1395708.0 1.2
BXD13/TyJ m 1283983.0 0.0   1   0.0 0.0 1283983.0, 1283983.0 0.84
BXD14/TyJ m 1386216.0 0.0   1   0.0 0.0 1386216.0, 1386216.0 1.17
BXD15/TyJ m 1119584.0 0.0   1   0.0 0.0 1119584.0, 1119584.0 0.3
BXD18/TyJ m 892333.0 0.0   1   0.0 0.0 892333.0, 892333.0 -0.45
BXD19/TyJ m 1327118.0 148146.0   2   104755.0 0.112 1222364.0, 1431873.0 0.98
BXD1/TyJ m 935028.0 0.0   1   0.0 0.0 935028.0, 935028.0 -0.31
BXD20/TyJ m 1240874.0 0.0   1   0.0 0.0 1240874.0, 1240874.0 0.7
BXD21/TyJ m 690116.0 0.0   1   0.0 0.0 690116.0, 690116.0 -1.11
BXD22/TyJ m 1166356.0 0.0   1   0.0 0.0 1166356.0, 1166356.0 0.45
BXD24/TyJ m 668778.0 0.0   1   0.0 0.0 668778.0, 668778.0 -1.18
BXD24/TyJ-Cep290rd16/J m 909080.0 0.0   1   0.0 0.0 909080.0, 909080.0 -0.39
BXD28/TyJ m 1111294.0 306148.0   2   216479.0 0.275 894815.0, 1327774.0 0.27
BXD29-Tlr4lps-2J/J m 898300.0 0.0   1   0.0 0.0 898300.0, 898300.0 -0.43
BXD2/TyJ m 1222302.0 0.0   1   0.0 0.0 1222302.0, 1222302.0 0.63
BXD32/TyJ m 801128.0 0.0   1   0.0 0.0 801128.0, 801128.0 -0.74
BXD33/TyJ m 1665110.0 0.0   1   0.0 0.0 1665110.0, 1665110.0 2.09
BXD34/TyJ m 532436.0 0.0   1   0.0 0.0 532436.0, 532436.0 -1.62
BXD36/TyJ m 787412.0 0.0   1   0.0 0.0 787412.0, 787412.0 -0.79
BXD38/TyJ m 620184.0 0.0   1   0.0 0.0 620184.0, 620184.0 -1.34
BXD39/TyJ m 869487.0 0.0   1   0.0 0.0 869487.0, 869487.0 -0.52
BXD40/TyJ m 1258190.0 0.0   1   0.0 0.0 1258190.0, 1258190.0 0.75
BXD42/TyJ m 878795.0 0.0   1   0.0 0.0 878795.0, 878795.0 -0.49
BXD5/TyJ m 989078.0 0.0   1   0.0 0.0 989078.0, 989078.0 -0.13
BXD6/TyJ m 1314125.0 0.0   1   0.0 0.0 1314125.0, 1314125.0 0.94
BXD8/TyJ m 772967.0 0.0   1   0.0 0.0 772967.0, 772967.0 -0.84
BXD9/TyJ m 1144067.0 0.0   1   0.0 0.0 1144067.0, 1144067.0 0.38
BXH10/TyJ m 696763.0 0.0   1   0.0 0.0 696763.0, 696763.0 -1.09
BXH19/TyJ m 797585.0 0.0   1   0.0 0.0 797585.0, 797585.0 -0.76
BXH20/KccJ m 1299764.0 0.0   1   0.0 0.0 1299764.0, 1299764.0 0.89
BXH22/KccJ m 1122306.0 0.0   1   0.0 0.0 1122306.0, 1122306.0 0.31
BXH2/TyJ m 963955.0 0.0   1   0.0 0.0 963955.0, 963955.0 -0.21
BXH4/TyJ m 1051384.0 24457.0   2   17294.0 0.0233 1034091.0, 1068678.0 0.08
BXH6/TyJ m 926679.0 0.0   1   0.0 0.0 926679.0, 926679.0 -0.33
BXH7/TyJ m 1173735.0 0.0   1   0.0 0.0 1173735.0, 1173735.0 0.48
BXH8/TyJ m 920884.0 0.0   1   0.0 0.0 920884.0, 920884.0 -0.35
BXH9/TyJ m 743484.0 0.0   1   0.0 0.0 743484.0, 743484.0 -0.93
C3H/HeJ m 948772.0 56292.0   2   39804.0 0.0593 908967.0, 988576.0 -0.26
C57BL/6J m 848838.0 137846.0   5 61646.0 0.162 650930.0, 980837.0 -0.59
C57L/J m 717361.0 0.0   1   0.0 0.0 717361.0, 717361.0 -1.02
C58/J m 1577924.0 0.0   1   0.0 0.0 1577924.0, 1577924.0 1.8
CAST/EiJ m 1880990.0 0.0   1   0.0 0.0 1880990.0, 1880990.0 2.79
CBA/J m 1039638.0 0.0   1   0.0 0.0 1039638.0, 1039638.0 0.04
CE/J m 918188.0 0.0   1   0.0 0.0 918188.0, 918188.0 -0.36
CXB11/HiAJ m 941050.0 361131.0   2   255358.0 0.384 685692.0, 1196408.0 -0.29
CXB12/HiAJ m 865832.0 52006.0   2   36774.0 0.0601 829059.0, 902606.0 -0.53
CXB13/HiAJ m 1171679.0 222015.0   3 128180.0 0.189 933942.0, 1373622.0 0.47
CXB1/ByJ m 1255405.0 113650.0   3 65616.0 0.0905 1136077.0, 1362365.0 0.74
CXB2/ByJ m 1029804.0 196280.0   3 113322.0 0.191 892061.0, 1254547.0 0.0
CXB3/ByJ m 814668.0 147483.0   2   104286.0 0.181 710381.0, 918954.0 -0.7
CXB4/ByJ m 871126.0 155974.0   2   110290.0 0.179 760835.0, 981416.0 -0.52
CXB6/ByJ m 878247.0 126856.0   3 73240.0 0.144 748848.0, 1002397.0 -0.49
CXB7/ByJ m 1338770.0 486928.0   2   344310.0 0.364 994460.0, 1683080.0 1.02
CXB8/HiAJ m 1309295.0 356130.0   3 205612.0 0.272 952845.0, 1665104.0 0.92
CXB9/HiAJ m 699203.0 161528.0   3 93258.0 0.231 553298.0, 872779.0 -1.08
DBA/2J m 883050.0 65827.0   4 32914.0 0.0745 818779.0, 975093.0 -0.48
FVB/NJ m 1455486.0 0.0   1   0.0 0.0 1455486.0, 1455486.0 1.4
I/LnJ m 1239968.0 0.0   1   0.0 0.0 1239968.0, 1239968.0 0.69
KK/HlJ m 937505.0 0.0   1   0.0 0.0 937505.0, 937505.0 -0.3
LG/J m 742155.0 0.0   1   0.0 0.0 742155.0, 742155.0 -0.94
LP/J m 1022795.0 0.0   1   0.0 0.0 1022795.0, 1022795.0 -0.02
MA/MyJ m 1026303.0 0.0   1   0.0 0.0 1026303.0, 1026303.0 -0.01
NOD/ShiLtJ m 889017.0 0.0   1   0.0 0.0 889017.0, 889017.0 -0.46
NON/ShiLtJ m 811299.0 0.0   1   0.0 0.0 811299.0, 811299.0 -0.71
NZW/LacJ m 945106.0 0.0   1   0.0 0.0 945106.0, 945106.0 -0.27
PL/J m 1113384.0 0.0   1   0.0 0.0 1113384.0, 1113384.0 0.28
RIIIS/J m 372365.0 0.0   1   0.0 0.0 372365.0, 372365.0 -2.15
SEA/GnJ m 1588995.0 0.0   1   0.0 0.0 1588995.0, 1588995.0 1.84
SJL/J m 1299204.0 0.0   1   0.0 0.0 1299204.0, 1299204.0 0.89
SM/J m 2218413.0 0.0   1   0.0 0.0 2218413.0, 2218413.0 3.9
SWR/J m 1096909.0 0.0   1   0.0 0.0 1096909.0, 1096909.0 0.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 723928.15 147416.8619 1023515.2582 424341.0418
AXB19b/PgnJ m 1568144.5 147416.8619 1867731.6082 1268557.3918
AXB24/PgnJ m 917449.7 147416.8619 1217036.8082 617862.5918
BALB/cJ m 992707.0667 120365.3637 1237318.9162 748095.2171
BXA16/PgnJ m 1015634.4 147416.8619 1315221.5082 716047.2918
BXD19/TyJ m 1327118.3 147416.8619 1626705.4082 1027531.1918
BXD28/TyJ m 1111294.35 147416.8619 1410881.4582 811707.2418
BXH4/TyJ m 1051384.25 147416.8619 1350971.3582 751797.1418
C3H/HeJ m 948771.5 147416.8619 1248358.6082 649184.3918
C57BL/6J m 848837.66 93234.6098 1038313.1839 659362.1361
CXB11/HiAJ m 941050.1 147416.8619 1240637.2082 641462.9918
CXB12/HiAJ m 865832.1 147416.8619 1165419.2082 566244.9918
CXB13/HiAJ m 1171678.5667 120365.3637 1416290.4162 927066.7171
CXB1/ByJ m 1255404.7 120365.3637 1500016.5495 1010792.8505
CXB2/ByJ m 1029803.9 120365.3637 1274415.7495 785192.0505
CXB3/ByJ m 814667.6 147416.8619 1114254.7082 515080.4918
CXB4/ByJ m 871125.6 147416.8619 1170712.7082 571538.4918
CXB6/ByJ m 878247.0333 120365.3637 1122858.8829 633635.1838
CXB7/ByJ m 1338769.55 147416.8619 1638356.6582 1039182.4418
CXB8/HiAJ m 1309294.8333 120365.3637 1553906.6829 1064682.9838
CXB9/HiAJ m 699202.5333 120365.3637 943814.3829 454590.6838
DBA/2J m 883050.025 104239.4627 1094890.1008 671209.9492




  GWAS USING LINEAR MIXED MODELS