Phenotype measure:   HMDPpheno7   citrate

ID, description, units MPD:50240   citrate   citrate (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   104 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno7 - citrate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested104 strains
Mean of the strain means735071   None
Median of the strain means647692   None
SD of the strain means± 492992
Coefficient of variation (CV)0.671
Min–max range of strain means28372   –   2694604   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 7435527869166.78 354072755674.608 2.5244 0.0079
Residuals 34 4768882720657.74 140261256489.934


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 704700.0 0.0   1   0.0 0.0 704700.0, 704700.0 -0.06
A/J m 1710060.0 1595360.0   2   1128090.0 0.933 581970.0, 2838150.0 1.98
AKR/J m 1292707.0 0.0   1   0.0 0.0 1292707.0, 1292707.0 1.13
AXB10/PgnJ m 211143.0 0.0   1   0.0 0.0 211143.0, 211143.0 -1.06
AXB12/PgnJ m 1049210.0 0.0   1   0.0 0.0 1049210.0, 1049210.0 0.64
AXB13/PgnJ m 488192.0 0.0   1   0.0 0.0 488192.0, 488192.0 -0.5
AXB15/PgnJ m 850910.0 0.0   1   0.0 0.0 850910.0, 850910.0 0.23
AXB19a/PgnJ m 682596.0 0.0   1   0.0 0.0 682596.0, 682596.0 -0.11
AXB19b/PgnJ m 1332531.0 782067.0   2   553005.0 0.587 779526.0, 1885536.0 1.21
AXB19/PgnJ m 1361559.0 0.0   1   0.0 0.0 1361559.0, 1361559.0 1.27
AXB1/PgnJ m 1906711.0 0.0   1   0.0 0.0 1906711.0, 1906711.0 2.38
AXB23/PgnJ m 1149709.0 0.0   1   0.0 0.0 1149709.0, 1149709.0 0.84
AXB24/PgnJ m 704673.0 84964.0   2   60079.0 0.121 644594.0, 764752.0 -0.06
AXB2/PgnJ m 847921.0 0.0   1   0.0 0.0 847921.0, 847921.0 0.23
AXB4/PgnJ m 618913.0 0.0   1   0.0 0.0 618913.0, 618913.0 -0.24
AXB5/PgnJ m 741022.0 0.0   1   0.0 0.0 741022.0, 741022.0 0.01
AXB6/PgnJ m 1285332.0 0.0   1   0.0 0.0 1285332.0, 1285332.0 1.12
AXB8/PgnJ m 278927.0 0.0   1   0.0 0.0 278927.0, 278927.0 -0.93
BALB/cJ m 1050508.0 257008.0   3 148384.0 0.245 754728.0, 1219348.0 0.64
BTBR T+ Itpr3tf/J m 871921.0 0.0   1   0.0 0.0 871921.0, 871921.0 0.28
BUB/BnJ m 651074.0 0.0   1   0.0 0.0 651074.0, 651074.0 -0.17
BXA11/PgnJ m 1660594.0 0.0   1   0.0 0.0 1660594.0, 1660594.0 1.88
BXA12/PgnJ m 243911.0 0.0   1   0.0 0.0 243911.0, 243911.0 -1.0
BXA13/PgnJ m 604442.0 0.0   1   0.0 0.0 604442.0, 604442.0 -0.26
BXA14/PgnJ m 614119.0 0.0   1   0.0 0.0 614119.0, 614119.0 -0.25
BXA16/PgnJ m 450343.0 189146.0   2   133746.0 0.42 316597.0, 584089.0 -0.58
BXA1/PgnJ m 292827.0 0.0   1   0.0 0.0 292827.0, 292827.0 -0.9
BXA24/PgnJ m 378890.0 0.0   1   0.0 0.0 378890.0, 378890.0 -0.72
BXA25/PgnJ m 707097.0 0.0   1   0.0 0.0 707097.0, 707097.0 -0.06
BXA26/PgnJ m 112422.0 0.0   1   0.0 0.0 112422.0, 112422.0 -1.26
BXA2/PgnJ m 419059.0 0.0   1   0.0 0.0 419059.0, 419059.0 -0.64
BXA4/PgnJ m 815263.0 0.0   1   0.0 0.0 815263.0, 815263.0 0.16
BXA7/PgnJ m 1763496.0 0.0   1   0.0 0.0 1763496.0, 1763496.0 2.09
BXA8/PgnJ m 60580.0 0.0   1   0.0 0.0 60580.0, 60580.0 -1.37
BXD11/TyJ m 360346.0 0.0   1   0.0 0.0 360346.0, 360346.0 -0.76
BXD12/TyJ m 1872655.0 0.0   1   0.0 0.0 1872655.0, 1872655.0 2.31
BXD13/TyJ m 1081924.0 0.0   1   0.0 0.0 1081924.0, 1081924.0 0.7
BXD14/TyJ m 634400.0 0.0   1   0.0 0.0 634400.0, 634400.0 -0.2
BXD15/TyJ m 139708.0 0.0   1   0.0 0.0 139708.0, 139708.0 -1.21
BXD18/TyJ m 776686.0 0.0   1   0.0 0.0 776686.0, 776686.0 0.08
BXD19/TyJ m 183520.0 129784.0   2   91771.0 0.707 91749.0, 275291.0 -1.12
BXD1/TyJ m 1853013.0 0.0   1   0.0 0.0 1853013.0, 1853013.0 2.27
BXD20/TyJ m 1006278.0 0.0   1   0.0 0.0 1006278.0, 1006278.0 0.55
BXD21/TyJ m 1033704.0 0.0   1   0.0 0.0 1033704.0, 1033704.0 0.61
BXD22/TyJ m 757085.0 0.0   1   0.0 0.0 757085.0, 757085.0 0.04
BXD24/TyJ m 411061.0 0.0   1   0.0 0.0 411061.0, 411061.0 -0.66
BXD24/TyJ-Cep290rd16/J m 87013.0 0.0   1   0.0 0.0 87013.0, 87013.0 -1.31
BXD28/TyJ m 471176.0 154117.0   2   108977.0 0.327 362198.0, 580153.0 -0.54
BXD29-Tlr4lps-2J/J m 713988.0 0.0   1   0.0 0.0 713988.0, 713988.0 -0.04
BXD2/TyJ m 400878.0 0.0   1   0.0 0.0 400878.0, 400878.0 -0.68
BXD32/TyJ m 149550.0 0.0   1   0.0 0.0 149550.0, 149550.0 -1.19
BXD33/TyJ m 643881.0 0.0   1   0.0 0.0 643881.0, 643881.0 -0.18
BXD34/TyJ m 152258.0 0.0   1   0.0 0.0 152258.0, 152258.0 -1.18
BXD38/TyJ m 357783.0 0.0   1   0.0 0.0 357783.0, 357783.0 -0.77
BXD39/TyJ m 631374.0 0.0   1   0.0 0.0 631374.0, 631374.0 -0.21
BXD40/TyJ m 349007.0 0.0   1   0.0 0.0 349007.0, 349007.0 -0.78
BXD42/TyJ m 384903.0 0.0   1   0.0 0.0 384903.0, 384903.0 -0.71
BXD5/TyJ m 237960.0 0.0   1   0.0 0.0 237960.0, 237960.0 -1.01
BXD6/TyJ m 644311.0 0.0   1   0.0 0.0 644311.0, 644311.0 -0.18
BXD8/TyJ m 2694604.0 0.0   1   0.0 0.0 2694604.0, 2694604.0 3.97
BXD9/TyJ m 596491.0 0.0   1   0.0 0.0 596491.0, 596491.0 -0.28
BXH10/TyJ m 72612.0 0.0   1   0.0 0.0 72612.0, 72612.0 -1.34
BXH19/TyJ m 166058.0 0.0   1   0.0 0.0 166058.0, 166058.0 -1.15
BXH20/KccJ m 737577.0 0.0   1   0.0 0.0 737577.0, 737577.0 0.01
BXH22/KccJ m 850756.0 0.0   1   0.0 0.0 850756.0, 850756.0 0.23
BXH2/TyJ m 656959.0 0.0   1   0.0 0.0 656959.0, 656959.0 -0.16
BXH4/TyJ m 526137.0 52427.0   2   37071.0 0.0996 489066.0, 563208.0 -0.42
BXH6/TyJ m 28372.0 0.0   1   0.0 0.0 28372.0, 28372.0 -1.43
BXH7/TyJ m 664347.0 0.0   1   0.0 0.0 664347.0, 664347.0 -0.14
BXH8/TyJ m 588654.0 0.0   1   0.0 0.0 588654.0, 588654.0 -0.3
BXH9/TyJ m 462675.0 0.0   1   0.0 0.0 462675.0, 462675.0 -0.55
C3H/HeJ m 702233.0 75807.0   2   53603.0 0.108 648630.0, 755837.0 -0.07
C57BL/6J m 443330.0 207065.0   5 92602.0 0.467 143570.0, 631374.0 -0.59
C57L/J m 145120.0 0.0   1   0.0 0.0 145120.0, 145120.0 -1.2
C58/J m 1130570.0 0.0   1   0.0 0.0 1130570.0, 1130570.0 0.8
CAST/EiJ m 731283.0 0.0   1   0.0 0.0 731283.0, 731283.0 -0.01
CBA/J m 456010.0 0.0   1   0.0 0.0 456010.0, 456010.0 -0.57
CE/J m 399885.0 0.0   1   0.0 0.0 399885.0, 399885.0 -0.68
CXB11/HiAJ m 470334.0 77068.0   2   54495.0 0.164 415839.0, 524830.0 -0.54
CXB12/HiAJ m 699765.0 14860.0   2   10508.0 0.0212 689257.0, 710273.0 -0.07
CXB13/HiAJ m 291809.0 122575.0   3 70769.0 0.42 174164.0, 418781.0 -0.9
CXB1/ByJ m 529974.0 12125.0   3 7000.0 0.0229 517831.0, 542081.0 -0.42
CXB2/ByJ m 654150.0 266733.0   3 153999.0 0.408 346162.0, 810243.0 -0.16
CXB3/ByJ m 704603.0 41997.0   2   29696.0 0.0596 674906.0, 734299.0 -0.06
CXB4/ByJ m 419024.0 227661.0   2   160980.0 0.543 258044.0, 580004.0 -0.64
CXB6/ByJ m 561662.0 83620.0   3 48278.0 0.149 490512.0, 653766.0 -0.35
CXB7/ByJ m 1466288.0 333367.0   2   235726.0 0.227 1230562.0, 1702014.0 1.48
CXB8/HiAJ m 759427.0 512647.0   3 295977.0 0.675 330489.0, 1327189.0 0.05
CXB9/HiAJ m 503659.0 78545.0   3 45348.0 0.156 449162.0, 593692.0 -0.47
DBA/2J m 1164259.0 327069.0   4 163535.0 0.281 864159.0, 1627255.0 0.87
FVB/NJ m 1087970.0 0.0   1   0.0 0.0 1087970.0, 1087970.0 0.72
I/LnJ m 1562152.0 0.0   1   0.0 0.0 1562152.0, 1562152.0 1.68
KK/HlJ m 854200.0 0.0   1   0.0 0.0 854200.0, 854200.0 0.24
LG/J m 515546.0 0.0   1   0.0 0.0 515546.0, 515546.0 -0.45
LP/J m 659506.0 0.0   1   0.0 0.0 659506.0, 659506.0 -0.15
MA/MyJ m 379472.0 0.0   1   0.0 0.0 379472.0, 379472.0 -0.72
NOD/ShiLtJ m 720638.0 0.0   1   0.0 0.0 720638.0, 720638.0 -0.03
NON/ShiLtJ m 422358.0 0.0   1   0.0 0.0 422358.0, 422358.0 -0.63
NZW/LacJ m 890337.0 0.0   1   0.0 0.0 890337.0, 890337.0 0.31
PL/J m 534268.0 0.0   1   0.0 0.0 534268.0, 534268.0 -0.41
SEA/GnJ m 1113987.0 0.0   1   0.0 0.0 1113987.0, 1113987.0 0.77
SJL/J m 2039697.0 0.0   1   0.0 0.0 2039697.0, 2039697.0 2.65
SM/J m 1610951.0 0.0   1   0.0 0.0 1610951.0, 1610951.0 1.78
SWR/J m 529839.0 0.0   1   0.0 0.0 529839.0, 529839.0 -0.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 1710059.65 264821.8802 2248242.462 1171876.838
AXB19b/PgnJ m 1332531.2 264821.8802 1870714.012 794348.388
AXB24/PgnJ m 704672.75 264821.8802 1242855.562 166489.938
BALB/cJ m 1050507.9 216226.1598 1489932.3259 611083.4741
BXA16/PgnJ m 450343.1 264821.8802 988525.912 0.0
BXD19/TyJ m 183519.8 264821.8802 721702.612 0.0
BXD28/TyJ m 471175.75 264821.8802 1009358.562 0.0
BXH4/TyJ m 526137.3 264821.8802 1064320.112 0.0
C3H/HeJ m 702233.25 264821.8802 1240416.062 164050.438
C57BL/6J m 443330.34 167488.0632 783707.0367 102953.6433
CXB11/HiAJ m 470334.5 264821.8802 1008517.312 0.0
CXB12/HiAJ m 699765.35 264821.8802 1237948.162 161582.538
CXB13/HiAJ m 291808.9 216226.1598 731233.3259 0.0
CXB1/ByJ m 529973.8333 216226.1598 969398.2593 90549.4074
CXB2/ByJ m 654150.2667 216226.1598 1093574.6926 214725.8407
CXB3/ByJ m 704602.95 264821.8802 1242785.762 166420.138
CXB4/ByJ m 419023.9 264821.8802 957206.712 0.0
CXB6/ByJ m 561662.1 216226.1598 1001086.5259 122237.6741
CXB7/ByJ m 1466288.1 264821.8802 2004470.912 928105.288
CXB8/HiAJ m 759426.5333 216226.1598 1198850.9593 320002.1074
CXB9/HiAJ m 503658.8333 216226.1598 943083.2593 64234.4074
DBA/2J m 1164259.325 187257.3473 1544812.0409 783706.6091




  GWAS USING LINEAR MIXED MODELS