Phenotype measure:   HMDPpheno7   pyridoxate

ID, description, units MPD:50239   pyridoxate   pyridoxate (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

HMDPpheno7 - pyridoxate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means327281   None
Median of the strain means335262   None
SD of the strain means± 118811
Coefficient of variation (CV)0.363
Min–max range of strain means61771   –   587004   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 514316837660.302 24491277983.8239 4.6968 < 0.0001
Residuals 34 177293439172.517 5214512916.8387


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 276918.0 0.0   1   0.0 0.0 276918.0, 276918.0 -0.42
A/J m 504591.0 124631.0   2   88127.0 0.247 416464.0, 592718.0 1.49
AKR/J m 389993.0 0.0   1   0.0 0.0 389993.0, 389993.0 0.53
AXB10/PgnJ m 351993.0 0.0   1   0.0 0.0 351993.0, 351993.0 0.21
AXB12/PgnJ m 364012.0 0.0   1   0.0 0.0 364012.0, 364012.0 0.31
AXB13/PgnJ m 559397.0 0.0   1   0.0 0.0 559397.0, 559397.0 1.95
AXB15/PgnJ m 587004.0 0.0   1   0.0 0.0 587004.0, 587004.0 2.19
AXB19a/PgnJ m 466095.0 0.0   1   0.0 0.0 466095.0, 466095.0 1.17
AXB19b/PgnJ m 378551.0 25350.0   2   17925.0 0.067 360626.0, 396477.0 0.43
AXB19/PgnJ m 390460.0 0.0   1   0.0 0.0 390460.0, 390460.0 0.53
AXB1/PgnJ m 280564.0 0.0   1   0.0 0.0 280564.0, 280564.0 -0.39
AXB23/PgnJ m 418974.0 0.0   1   0.0 0.0 418974.0, 418974.0 0.77
AXB24/PgnJ m 368189.0 63490.0   2   44894.0 0.172 323295.0, 413083.0 0.34
AXB2/PgnJ m 353970.0 0.0   1   0.0 0.0 353970.0, 353970.0 0.22
AXB4/PgnJ m 292768.0 0.0   1   0.0 0.0 292768.0, 292768.0 -0.29
AXB5/PgnJ m 261422.0 0.0   1   0.0 0.0 261422.0, 261422.0 -0.55
AXB6/PgnJ m 269774.0 0.0   1   0.0 0.0 269774.0, 269774.0 -0.48
AXB8/PgnJ m 453304.0 0.0   1   0.0 0.0 453304.0, 453304.0 1.06
BALB/cJ m 246027.0 17404.0   3 10048.0 0.0707 230062.0, 264580.0 -0.68
BTBR T+ Itpr3tf/J m 290576.0 0.0   1   0.0 0.0 290576.0, 290576.0 -0.31
BUB/BnJ m 420579.0 0.0   1   0.0 0.0 420579.0, 420579.0 0.79
BXA11/PgnJ m 371670.0 0.0   1   0.0 0.0 371670.0, 371670.0 0.37
BXA12/PgnJ m 328321.0 0.0   1   0.0 0.0 328321.0, 328321.0 0.01
BXA13/PgnJ m 335522.0 0.0   1   0.0 0.0 335522.0, 335522.0 0.07
BXA14/PgnJ m 303036.0 0.0   1   0.0 0.0 303036.0, 303036.0 -0.2
BXA16/PgnJ m 236920.0 275235.0   2   194620.0 1.16 42300.0, 431541.0 -0.76
BXA1/PgnJ m 312180.0 0.0   1   0.0 0.0 312180.0, 312180.0 -0.13
BXA24/PgnJ m 414859.0 0.0   1   0.0 0.0 414859.0, 414859.0 0.74
BXA25/PgnJ m 389880.0 0.0   1   0.0 0.0 389880.0, 389880.0 0.53
BXA26/PgnJ m 370284.0 0.0   1   0.0 0.0 370284.0, 370284.0 0.36
BXA2/PgnJ m 373313.0 0.0   1   0.0 0.0 373313.0, 373313.0 0.39
BXA4/PgnJ m 276510.0 0.0   1   0.0 0.0 276510.0, 276510.0 -0.43
BXA7/PgnJ m 276374.0 0.0   1   0.0 0.0 276374.0, 276374.0 -0.43
BXA8/PgnJ m 426471.0 0.0   1   0.0 0.0 426471.0, 426471.0 0.83
BXD11/TyJ m 320261.0 0.0   1   0.0 0.0 320261.0, 320261.0 -0.06
BXD12/TyJ m 398352.0 0.0   1   0.0 0.0 398352.0, 398352.0 0.6
BXD13/TyJ m 351250.0 0.0   1   0.0 0.0 351250.0, 351250.0 0.2
BXD14/TyJ m 328712.0 0.0   1   0.0 0.0 328712.0, 328712.0 0.01
BXD15/TyJ m 116285.0 0.0   1   0.0 0.0 116285.0, 116285.0 -1.78
BXD18/TyJ m 61771.0 0.0   1   0.0 0.0 61771.0, 61771.0 -2.23
BXD19/TyJ m 109576.0 1162.0   2   822.0 0.0106 108755.0, 110398.0 -1.83
BXD1/TyJ m 464443.0 0.0   1   0.0 0.0 464443.0, 464443.0 1.15
BXD20/TyJ m 66836.0 0.0   1   0.0 0.0 66836.0, 66836.0 -2.19
BXD21/TyJ m 542540.0 0.0   1   0.0 0.0 542540.0, 542540.0 1.81
BXD22/TyJ m 397576.0 0.0   1   0.0 0.0 397576.0, 397576.0 0.59
BXD24/TyJ m 360399.0 0.0   1   0.0 0.0 360399.0, 360399.0 0.28
BXD24/TyJ-Cep290rd16/J m 340469.0 0.0   1   0.0 0.0 340469.0, 340469.0 0.11
BXD28/TyJ m 87394.0 10608.0   2   7501.0 0.121 79892.0, 94895.0 -2.02
BXD29-Tlr4lps-2J/J m 195074.0 0.0   1   0.0 0.0 195074.0, 195074.0 -1.11
BXD2/TyJ m 427513.0 0.0   1   0.0 0.0 427513.0, 427513.0 0.84
BXD32/TyJ m 350088.0 0.0   1   0.0 0.0 350088.0, 350088.0 0.19
BXD33/TyJ m 90776.0 0.0   1   0.0 0.0 90776.0, 90776.0 -1.99
BXD34/TyJ m 425740.0 0.0   1   0.0 0.0 425740.0, 425740.0 0.83
BXD36/TyJ m 88812.0 0.0   1   0.0 0.0 88812.0, 88812.0 -2.01
BXD38/TyJ m 425318.0 0.0   1   0.0 0.0 425318.0, 425318.0 0.83
BXD39/TyJ m 106129.0 0.0   1   0.0 0.0 106129.0, 106129.0 -1.86
BXD40/TyJ m 368912.0 0.0   1   0.0 0.0 368912.0, 368912.0 0.35
BXD42/TyJ m 159374.0 0.0   1   0.0 0.0 159374.0, 159374.0 -1.41
BXD5/TyJ m 463570.0 0.0   1   0.0 0.0 463570.0, 463570.0 1.15
BXD6/TyJ m 173269.0 0.0   1   0.0 0.0 173269.0, 173269.0 -1.3
BXD8/TyJ m 90140.0 0.0   1   0.0 0.0 90140.0, 90140.0 -2.0
BXD9/TyJ m 553348.0 0.0   1   0.0 0.0 553348.0, 553348.0 1.9
BXH10/TyJ m 432986.0 0.0   1   0.0 0.0 432986.0, 432986.0 0.89
BXH19/TyJ m 325765.0 0.0   1   0.0 0.0 325765.0, 325765.0 -0.01
BXH20/KccJ m 441392.0 0.0   1   0.0 0.0 441392.0, 441392.0 0.96
BXH22/KccJ m 396411.0 0.0   1   0.0 0.0 396411.0, 396411.0 0.58
BXH2/TyJ m 484114.0 0.0   1   0.0 0.0 484114.0, 484114.0 1.32
BXH4/TyJ m 302978.0 79195.0   2   55999.0 0.261 246978.0, 358977.0 -0.2
BXH6/TyJ m 335001.0 0.0   1   0.0 0.0 335001.0, 335001.0 0.06
BXH7/TyJ m 382392.0 0.0   1   0.0 0.0 382392.0, 382392.0 0.46
BXH8/TyJ m 342196.0 0.0   1   0.0 0.0 342196.0, 342196.0 0.13
BXH9/TyJ m 418826.0 0.0   1   0.0 0.0 418826.0, 418826.0 0.77
C3H/HeJ m 322318.0 5821.0   2   4116.0 0.0181 318202.0, 326434.0 -0.04
C57BL/6J m 327969.0 77000.0   5 34435.0 0.235 244354.0, 454175.0 0.01
C57L/J m 303458.0 0.0   1   0.0 0.0 303458.0, 303458.0 -0.2
C58/J m 66255.0 0.0   1   0.0 0.0 66255.0, 66255.0 -2.2
CAST/EiJ m 527033.0 0.0   1   0.0 0.0 527033.0, 527033.0 1.68
CBA/J m 76311.0 0.0   1   0.0 0.0 76311.0, 76311.0 -2.11
CE/J m 383639.0 0.0   1   0.0 0.0 383639.0, 383639.0 0.47
CXB11/HiAJ m 399313.0 65123.0   2   46049.0 0.163 353264.0, 445362.0 0.61
CXB12/HiAJ m 282669.0 7152.0   2   5057.0 0.0253 277611.0, 287726.0 -0.38
CXB13/HiAJ m 286927.0 47029.0   3 27152.0 0.164 233355.0, 321408.0 -0.34
CXB1/ByJ m 245000.0 100414.0   3 57974.0 0.41 150914.0, 350727.0 -0.69
CXB2/ByJ m 331653.0 42950.0   3 24797.0 0.13 288534.0, 374432.0 0.04
CXB3/ByJ m 287564.0 21592.0   2   15267.0 0.0751 272296.0, 302831.0 -0.33
CXB4/ByJ m 387031.0 31390.0   2   22196.0 0.0811 364835.0, 409228.0 0.5
CXB6/ByJ m 253573.0 52151.0   3 30109.0 0.206 220352.0, 313681.0 -0.62
CXB7/ByJ m 279558.0 70740.0   2   50021.0 0.253 229537.0, 329579.0 -0.4
CXB8/HiAJ m 271884.0 39933.0   3 23055.0 0.147 233640.0, 313315.0 -0.47
CXB9/HiAJ m 311140.0 25819.0   3 14907.0 0.083 283121.0, 333973.0 -0.14
DBA/2J m 83575.0 23116.0   4 11558.0 0.277 62675.0, 107076.0 -2.05
FVB/NJ m 315756.0 0.0   1   0.0 0.0 315756.0, 315756.0 -0.1
I/LnJ m 229750.0 0.0   1   0.0 0.0 229750.0, 229750.0 -0.82
KK/HlJ m 439830.0 0.0   1   0.0 0.0 439830.0, 439830.0 0.95
LG/J m 363576.0 0.0   1   0.0 0.0 363576.0, 363576.0 0.31
LP/J m 311246.0 0.0   1   0.0 0.0 311246.0, 311246.0 -0.13
MA/MyJ m 305856.0 0.0   1   0.0 0.0 305856.0, 305856.0 -0.18
NOD/ShiLtJ m 289319.0 0.0   1   0.0 0.0 289319.0, 289319.0 -0.32
NON/ShiLtJ m 274741.0 0.0   1   0.0 0.0 274741.0, 274741.0 -0.44
NZW/LacJ m 385544.0 0.0   1   0.0 0.0 385544.0, 385544.0 0.49
PL/J m 363391.0 0.0   1   0.0 0.0 363391.0, 363391.0 0.3
RIIIS/J m 477238.0 0.0   1   0.0 0.0 477238.0, 477238.0 1.26
SEA/GnJ m 307533.0 0.0   1   0.0 0.0 307533.0, 307533.0 -0.17
SJL/J m 200036.0 0.0   1   0.0 0.0 200036.0, 200036.0 -1.07
SM/J m 432868.0 0.0   1   0.0 0.0 432868.0, 432868.0 0.89
SWR/J m 501695.0 0.0   1   0.0 0.0 501695.0, 501695.0 1.47


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 504590.8 51061.301 608359.8486 400821.7514
AXB19b/PgnJ m 378551.2 51061.301 482320.2486 274782.1514
AXB24/PgnJ m 368188.95 51061.301 471957.9986 264419.9014
BALB/cJ m 246027.0333 41691.3777 330754.1067 161299.96
BXA16/PgnJ m 236920.5 51061.301 340689.5486 133151.4514
BXD19/TyJ m 109576.15 51061.301 213345.1986 5807.1014
BXD28/TyJ m 87393.55 51061.301 191162.5986 0.0
BXH4/TyJ m 302977.55 51061.301 406746.5986 199208.5014
C3H/HeJ m 322318.3 51061.301 426087.3486 218549.2514
C57BL/6J m 327968.94 32294.0023 393598.2488 262339.6312
CXB11/HiAJ m 399313.05 51061.301 503082.0986 295544.0014
CXB12/HiAJ m 282668.55 51061.301 386437.5986 178899.5014
CXB13/HiAJ m 286927.1667 41691.3777 371654.24 202200.0933
CXB1/ByJ m 244999.9667 41691.3777 329727.04 160272.8933
CXB2/ByJ m 331652.5667 41691.3777 416379.64 246925.4933
CXB3/ByJ m 287563.7 51061.301 391332.7486 183794.6514
CXB4/ByJ m 387031.45 51061.301 490800.4986 283262.4014
CXB6/ByJ m 253573.3 41691.3777 338300.3734 168846.2266
CXB7/ByJ m 279558.1 51061.301 383327.1486 175789.0514
CXB8/HiAJ m 271883.9667 41691.3777 356611.04 187156.8933
CXB9/HiAJ m 311140.1667 41691.3777 395867.24 226413.0933
DBA/2J m 83574.95 36105.7922 156950.7479 10199.1521




  GWAS USING LINEAR MIXED MODELS