Project measure / variable:   HMDPpheno7   riboflavin

ID, description, units MPD:50235   riboflavin   riboflavin (Vitamin B2) (16h fast), relative abundance    
Data set, strains HMDPpheno7   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings


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  STRAIN COMPARISON PLOT
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HMDPpheno7 - riboflavin (Vitamin B2) (16h fast), relative abundance

BXD29-Tlr4<lps-2J>/JC58/JBXD38/TyJBXD40/TyJPL/JNOD/ShiLtJC57L/JAXB1/PgnJBXD33/TyJBXD2/TyJBXD22/TyJFVB/NJBXD12/TyJBXD24/TyJ-Cep290<rd16>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 T<+> Itpr3<tf>/JBXA2/PgnJBXA4/PgnJBXH8/TyJAXB10/PgnJCXB7/ByJAXB24/PgnJBXD21/TyJAXB5/PgnJBXA14/PgnJ (no units) 400,000450,000500,000550,000600,000650,000700,000750,000800,000850,000900,000950,0001,000,000femalemale


  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means606490   None
Median of the strain means608530   None
SD of the strain means± 107608
Coefficient of variation (CV)0.177
Min–max range of strain means387260   –   847074   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 283616444081.272 13505544956.2511 1.4693 0.1552
Residuals 34 312523597581.96 9191870517.1165


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 106 (106)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129X1/SvJ m 640718.0 0.0   1   0.0 0.0 640718.0, 640718.0 0.32
A/J m 528455.0 95044.0   2   67206.0 0.18 461248.0, 595661.0 -0.73
AKR/J m 503190.0 0.0   1   0.0 0.0 503190.0, 503190.0 -0.96
AXB10/PgnJ m 443775.0 0.0   1   0.0 0.0 443775.0, 443775.0 -1.51
AXB12/PgnJ m 547048.0 0.0   1   0.0 0.0 547048.0, 547048.0 -0.55
AXB13/PgnJ m 544875.0 0.0   1   0.0 0.0 544875.0, 544875.0 -0.57
AXB15/PgnJ m 488677.0 0.0   1   0.0 0.0 488677.0, 488677.0 -1.09
AXB19a/PgnJ m 523450.0 0.0   1   0.0 0.0 523450.0, 523450.0 -0.77
AXB19b/PgnJ m 700336.0 25801.0   2   18244.0 0.0368 682092.0, 718580.0 0.87
AXB19/PgnJ m 724724.0 0.0   1   0.0 0.0 724724.0, 724724.0 1.1
AXB1/PgnJ m 764740.0 0.0   1   0.0 0.0 764740.0, 764740.0 1.47
AXB23/PgnJ m 621941.0 0.0   1   0.0 0.0 621941.0, 621941.0 0.14
AXB24/PgnJ m 408781.0 19113.0   2   13515.0 0.0468 395266.0, 422296.0 -1.84
AXB2/PgnJ m 675587.0 0.0   1   0.0 0.0 675587.0, 675587.0 0.64
AXB4/PgnJ m 709777.0 0.0   1   0.0 0.0 709777.0, 709777.0 0.96
AXB5/PgnJ m 404602.0 0.0   1   0.0 0.0 404602.0, 404602.0 -1.88
AXB6/PgnJ m 635624.0 0.0   1   0.0 0.0 635624.0, 635624.0 0.27
AXB8/PgnJ m 496864.0 0.0   1   0.0 0.0 496864.0, 496864.0 -1.02
BALB/cJ m 587032.0 72098.0   3 41626.0 0.123 509617.0, 652260.0 -0.18
BTBR T+ Itpr3tf/J m 459830.0 0.0   1   0.0 0.0 459830.0, 459830.0 -1.36
BUB/BnJ m 539961.0 0.0   1   0.0 0.0 539961.0, 539961.0 -0.62
BXA11/PgnJ m 617134.0 0.0   1   0.0 0.0 617134.0, 617134.0 0.1
BXA12/PgnJ m 556595.0 0.0   1   0.0 0.0 556595.0, 556595.0 -0.46
BXA13/PgnJ m 703922.0 0.0   1   0.0 0.0 703922.0, 703922.0 0.91
BXA14/PgnJ m 387260.0 0.0   1   0.0 0.0 387260.0, 387260.0 -2.04
BXA16/PgnJ m 537607.0 101469.0   2   71749.0 0.189 465858.0, 609356.0 -0.64
BXA1/PgnJ m 599498.0 0.0   1   0.0 0.0 599498.0, 599498.0 -0.06
BXA24/PgnJ m 496484.0 0.0   1   0.0 0.0 496484.0, 496484.0 -1.02
BXA25/PgnJ m 479496.0 0.0   1   0.0 0.0 479496.0, 479496.0 -1.18
BXA26/PgnJ m 680372.0 0.0   1   0.0 0.0 680372.0, 680372.0 0.69
BXA2/PgnJ m 455162.0 0.0   1   0.0 0.0 455162.0, 455162.0 -1.41
BXA4/PgnJ m 453058.0 0.0   1   0.0 0.0 453058.0, 453058.0 -1.43
BXA7/PgnJ m 511215.0 0.0   1   0.0 0.0 511215.0, 511215.0 -0.89
BXA8/PgnJ m 545910.0 0.0   1   0.0 0.0 545910.0, 545910.0 -0.56
BXD11/TyJ m 694657.0 0.0   1   0.0 0.0 694657.0, 694657.0 0.82
BXD12/TyJ m 738240.0 0.0   1   0.0 0.0 738240.0, 738240.0 1.22
BXD13/TyJ m 597046.0 0.0   1   0.0 0.0 597046.0, 597046.0 -0.09
BXD14/TyJ m 610459.0 0.0   1   0.0 0.0 610459.0, 610459.0 0.04
BXD15/TyJ m 637505.0 0.0   1   0.0 0.0 637505.0, 637505.0 0.29
BXD18/TyJ m 616515.0 0.0   1   0.0 0.0 616515.0, 616515.0 0.09
BXD19/TyJ m 628156.0 28780.0   2   20351.0 0.0458 607805.0, 648506.0 0.2
BXD1/TyJ m 551277.0 0.0   1   0.0 0.0 551277.0, 551277.0 -0.51
BXD20/TyJ m 662568.0 0.0   1   0.0 0.0 662568.0, 662568.0 0.52
BXD21/TyJ m 405803.0 0.0   1   0.0 0.0 405803.0, 405803.0 -1.86
BXD22/TyJ m 747565.0 0.0   1   0.0 0.0 747565.0, 747565.0 1.31
BXD24/TyJ m 659737.0 0.0   1   0.0 0.0 659737.0, 659737.0 0.49
BXD24/TyJ-Cep290rd16/J m 732188.0 0.0   1   0.0 0.0 732188.0, 732188.0 1.17
BXD28/TyJ m 565634.0 40545.0   2   28670.0 0.0717 536964.0, 594304.0 -0.38
BXD29-Tlr4lps-2J/J m 847074.0 0.0   1   0.0 0.0 847074.0, 847074.0 2.24
BXD2/TyJ m 757080.0 0.0   1   0.0 0.0 757080.0, 757080.0 1.4
BXD32/TyJ m 622310.0 0.0   1   0.0 0.0 622310.0, 622310.0 0.15
BXD33/TyJ m 760619.0 0.0   1   0.0 0.0 760619.0, 760619.0 1.43
BXD34/TyJ m 706088.0 0.0   1   0.0 0.0 706088.0, 706088.0 0.93
BXD36/TyJ m 649033.0 0.0   1   0.0 0.0 649033.0, 649033.0 0.4
BXD38/TyJ m 837393.0 0.0   1   0.0 0.0 837393.0, 837393.0 2.15
BXD39/TyJ m 630187.0 0.0   1   0.0 0.0 630187.0, 630187.0 0.22
BXD40/TyJ m 824374.0 0.0   1   0.0 0.0 824374.0, 824374.0 2.02
BXD42/TyJ m 578585.0 0.0   1   0.0 0.0 578585.0, 578585.0 -0.26
BXD5/TyJ m 540805.0 0.0   1   0.0 0.0 540805.0, 540805.0 -0.61
BXD6/TyJ m 679940.0 0.0   1   0.0 0.0 679940.0, 679940.0 0.68
BXD8/TyJ m 518748.0 0.0   1   0.0 0.0 518748.0, 518748.0 -0.82
BXD9/TyJ m 669240.0 0.0   1   0.0 0.0 669240.0, 669240.0 0.58
BXH10/TyJ m 724974.0 0.0   1   0.0 0.0 724974.0, 724974.0 1.1
BXH19/TyJ m 482154.0 0.0   1   0.0 0.0 482154.0, 482154.0 -1.16
BXH20/KccJ m 668913.0 0.0   1   0.0 0.0 668913.0, 668913.0 0.58
BXH22/KccJ m 690746.0 0.0   1   0.0 0.0 690746.0, 690746.0 0.78
BXH2/TyJ m 597324.0 0.0   1   0.0 0.0 597324.0, 597324.0 -0.09
BXH4/TyJ m 505062.0 75910.0   2   53677.0 0.15 451385.0, 558738.0 -0.94
BXH6/TyJ m 718379.0 0.0   1   0.0 0.0 718379.0, 718379.0 1.04
BXH7/TyJ m 606600.0 0.0   1   0.0 0.0 606600.0, 606600.0 0.0
BXH8/TyJ m 444347.0 0.0   1   0.0 0.0 444347.0, 444347.0 -1.51
BXH9/TyJ m 677006.0 0.0   1   0.0 0.0 677006.0, 677006.0 0.66
C3H/HeJ m 544138.0 41781.0   2   29543.0 0.0768 514594.0, 573681.0 -0.58
C57BL/6J m 586342.0 89808.0   5 40163.0 0.153 507637.0, 736392.0 -0.19
C57L/J m 769604.0 0.0   1   0.0 0.0 769604.0, 769604.0 1.52
C58/J m 845697.0 0.0   1   0.0 0.0 845697.0, 845697.0 2.22
CAST/EiJ m 634597.0 0.0   1   0.0 0.0 634597.0, 634597.0 0.26
CBA/J m 612005.0 0.0   1   0.0 0.0 612005.0, 612005.0 0.05
CE/J m 516853.0 0.0   1   0.0 0.0 516853.0, 516853.0 -0.83
CXB11/HiAJ m 653287.0 81995.0   2   57980.0 0.126 595308.0, 711267.0 0.43
CXB12/HiAJ m 513305.0 41273.0   2   29185.0 0.0804 484120.0, 542489.0 -0.87
CXB13/HiAJ m 666909.0 265466.0   3 153267.0 0.398 507012.0, 973346.0 0.56
CXB1/ByJ m 530160.0 74250.0   3 42868.0 0.14 475275.0, 614644.0 -0.71
CXB2/ByJ m 680234.0 139366.0   3 80463.0 0.205 553750.0, 829641.0 0.69
CXB3/ByJ m 519848.0 38472.0   2   27204.0 0.074 492644.0, 547053.0 -0.81
CXB4/ByJ m 499509.0 31491.0   2   22267.0 0.063 477241.0, 521776.0 -0.99
CXB6/ByJ m 542598.0 50796.0   3 29327.0 0.0936 507767.0, 600884.0 -0.59
CXB7/ByJ m 438109.0 8512.0   2   6019.0 0.0194 432090.0, 444128.0 -1.56
CXB8/HiAJ m 588363.0 66032.0   3 38123.0 0.112 512204.0, 629616.0 -0.17
CXB9/HiAJ m 554073.0 96259.0   3 55575.0 0.174 445028.0, 627246.0 -0.49
DBA/2J m 657156.0 42130.0   4 21065.0 0.0641 595731.0, 691374.0 0.47
FVB/NJ m 741854.0 0.0   1   0.0 0.0 741854.0, 741854.0 1.26
I/LnJ m 600813.0 0.0   1   0.0 0.0 600813.0, 600813.0 -0.05
KK/HlJ m 482609.0 0.0   1   0.0 0.0 482609.0, 482609.0 -1.15
LG/J m 498831.0 0.0   1   0.0 0.0 498831.0, 498831.0 -1.0
LP/J m 695428.0 0.0   1   0.0 0.0 695428.0, 695428.0 0.83
MA/MyJ m 484944.0 0.0   1   0.0 0.0 484944.0, 484944.0 -1.13
NOD/ShiLtJ m 769771.0 0.0   1   0.0 0.0 769771.0, 769771.0 1.52
NON/ShiLtJ m 589349.0 0.0   1   0.0 0.0 589349.0, 589349.0 -0.16
NZW/LacJ m 511662.0 0.0   1   0.0 0.0 511662.0, 511662.0 -0.88
PL/J m 812401.0 0.0   1   0.0 0.0 812401.0, 812401.0 1.91
RIIIS/J m 665308.0 0.0   1   0.0 0.0 665308.0, 665308.0 0.55
SEA/GnJ m 699074.0 0.0   1   0.0 0.0 699074.0, 699074.0 0.86
SJL/J m 504164.0 0.0   1   0.0 0.0 504164.0, 504164.0 -0.95
SM/J m 678626.0 0.0   1   0.0 0.0 678626.0, 678626.0 0.67
SWR/J m 642254.0 0.0   1   0.0 0.0 642254.0, 642254.0 0.33


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 528454.65 67793.3275 666227.2677 390682.0323
AXB19b/PgnJ m 700336.15 67793.3275 838108.7677 562563.5323
AXB24/PgnJ m 408780.7 67793.3275 546553.3177 271008.0823
BALB/cJ m 587032.4667 55353.0201 699523.3379 474541.5954
BXA16/PgnJ m 537607.15 67793.3275 675379.7677 399834.5323
BXD19/TyJ m 628155.8 67793.3275 765928.4177 490383.1823
BXD28/TyJ m 565633.75 67793.3275 703406.3677 427861.1323
BXH4/TyJ m 505061.55 67793.3275 642834.1677 367288.9323
C3H/HeJ m 544137.6 67793.3275 681910.2177 406364.9823
C57BL/6J m 586341.68 42876.265 673476.7342 499206.6258
CXB11/HiAJ m 653287.35 67793.3275 791059.9677 515514.7323
CXB12/HiAJ m 513304.7 67793.3275 651077.3177 375532.0823
CXB13/HiAJ m 666909.1 55353.0201 779399.9713 554418.2287
CXB1/ByJ m 530159.9667 55353.0201 642650.8379 417669.0954
CXB2/ByJ m 680234.0 55353.0201 792724.8713 567743.1287
CXB3/ByJ m 519848.45 67793.3275 657621.0677 382075.8323
CXB4/ByJ m 499508.8 67793.3275 637281.4177 361736.1823
CXB6/ByJ m 542598.3667 55353.0201 655089.2379 430107.4954
CXB7/ByJ m 438108.7 67793.3275 575881.3177 300336.0823
CXB8/HiAJ m 588362.8333 55353.0201 700853.7046 475871.9621
CXB9/HiAJ m 554072.8 55353.0201 666563.6713 441581.9287
DBA/2J m 657156.15 47937.1216 754576.1022 559736.1978




  GWAS USING LINEAR MIXED MODELS

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