Phenotype measure:   HMDPpheno7   riboflavin

ID, description, units MPD:50235   riboflavin   riboflavin (Vitamin B2) (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno7 - riboflavin (Vitamin B2) (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means606490   None
Median of the strain means608530   None
SD of the strain means± 107608
Coefficient of variation (CV)0.177
Min–max range of strain means387260   –   847074   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 283616444081.272 13505544956.2511 1.4693 0.1552
Residuals 34 312523597581.96 9191870517.1165


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 640718.0 0.0   1   0.0 0.0 640718.0, 640718.0 0.32
A/J m 528455.0 95044.0   2   67206.0 0.18 461248.0, 595661.0 -0.73
AKR/J m 503190.0 0.0   1   0.0 0.0 503190.0, 503190.0 -0.96
AXB10/PgnJ m 443775.0 0.0   1   0.0 0.0 443775.0, 443775.0 -1.51
AXB12/PgnJ m 547048.0 0.0   1   0.0 0.0 547048.0, 547048.0 -0.55
AXB13/PgnJ m 544875.0 0.0   1   0.0 0.0 544875.0, 544875.0 -0.57
AXB15/PgnJ m 488677.0 0.0   1   0.0 0.0 488677.0, 488677.0 -1.09
AXB19a/PgnJ m 523450.0 0.0   1   0.0 0.0 523450.0, 523450.0 -0.77
AXB19b/PgnJ m 700336.0 25801.0   2   18244.0 0.0368 682092.0, 718580.0 0.87
AXB19/PgnJ m 724724.0 0.0   1   0.0 0.0 724724.0, 724724.0 1.1
AXB1/PgnJ m 764740.0 0.0   1   0.0 0.0 764740.0, 764740.0 1.47
AXB23/PgnJ m 621941.0 0.0   1   0.0 0.0 621941.0, 621941.0 0.14
AXB24/PgnJ m 408781.0 19113.0   2   13515.0 0.0468 395266.0, 422296.0 -1.84
AXB2/PgnJ m 675587.0 0.0   1   0.0 0.0 675587.0, 675587.0 0.64
AXB4/PgnJ m 709777.0 0.0   1   0.0 0.0 709777.0, 709777.0 0.96
AXB5/PgnJ m 404602.0 0.0   1   0.0 0.0 404602.0, 404602.0 -1.88
AXB6/PgnJ m 635624.0 0.0   1   0.0 0.0 635624.0, 635624.0 0.27
AXB8/PgnJ m 496864.0 0.0   1   0.0 0.0 496864.0, 496864.0 -1.02
BALB/cJ m 587032.0 72098.0   3 41626.0 0.123 509617.0, 652260.0 -0.18
BTBR T+ Itpr3tf/J m 459830.0 0.0   1   0.0 0.0 459830.0, 459830.0 -1.36
BUB/BnJ m 539961.0 0.0   1   0.0 0.0 539961.0, 539961.0 -0.62
BXA11/PgnJ m 617134.0 0.0   1   0.0 0.0 617134.0, 617134.0 0.1
BXA12/PgnJ m 556595.0 0.0   1   0.0 0.0 556595.0, 556595.0 -0.46
BXA13/PgnJ m 703922.0 0.0   1   0.0 0.0 703922.0, 703922.0 0.91
BXA14/PgnJ m 387260.0 0.0   1   0.0 0.0 387260.0, 387260.0 -2.04
BXA16/PgnJ m 537607.0 101469.0   2   71749.0 0.189 465858.0, 609356.0 -0.64
BXA1/PgnJ m 599498.0 0.0   1   0.0 0.0 599498.0, 599498.0 -0.06
BXA24/PgnJ m 496484.0 0.0   1   0.0 0.0 496484.0, 496484.0 -1.02
BXA25/PgnJ m 479496.0 0.0   1   0.0 0.0 479496.0, 479496.0 -1.18
BXA26/PgnJ m 680372.0 0.0   1   0.0 0.0 680372.0, 680372.0 0.69
BXA2/PgnJ m 455162.0 0.0   1   0.0 0.0 455162.0, 455162.0 -1.41
BXA4/PgnJ m 453058.0 0.0   1   0.0 0.0 453058.0, 453058.0 -1.43
BXA7/PgnJ m 511215.0 0.0   1   0.0 0.0 511215.0, 511215.0 -0.89
BXA8/PgnJ m 545910.0 0.0   1   0.0 0.0 545910.0, 545910.0 -0.56
BXD11/TyJ m 694657.0 0.0   1   0.0 0.0 694657.0, 694657.0 0.82
BXD12/TyJ m 738240.0 0.0   1   0.0 0.0 738240.0, 738240.0 1.22
BXD13/TyJ m 597046.0 0.0   1   0.0 0.0 597046.0, 597046.0 -0.09
BXD14/TyJ m 610459.0 0.0   1   0.0 0.0 610459.0, 610459.0 0.04
BXD15/TyJ m 637505.0 0.0   1   0.0 0.0 637505.0, 637505.0 0.29
BXD18/TyJ m 616515.0 0.0   1   0.0 0.0 616515.0, 616515.0 0.09
BXD19/TyJ m 628156.0 28780.0   2   20351.0 0.0458 607805.0, 648506.0 0.2
BXD1/TyJ m 551277.0 0.0   1   0.0 0.0 551277.0, 551277.0 -0.51
BXD20/TyJ m 662568.0 0.0   1   0.0 0.0 662568.0, 662568.0 0.52
BXD21/TyJ m 405803.0 0.0   1   0.0 0.0 405803.0, 405803.0 -1.86
BXD22/TyJ m 747565.0 0.0   1   0.0 0.0 747565.0, 747565.0 1.31
BXD24/TyJ m 659737.0 0.0   1   0.0 0.0 659737.0, 659737.0 0.49
BXD24/TyJ-Cep290rd16/J m 732188.0 0.0   1   0.0 0.0 732188.0, 732188.0 1.17
BXD28/TyJ m 565634.0 40545.0   2   28670.0 0.0717 536964.0, 594304.0 -0.38
BXD29-Tlr4lps-2J/J m 847074.0 0.0   1   0.0 0.0 847074.0, 847074.0 2.24
BXD2/TyJ m 757080.0 0.0   1   0.0 0.0 757080.0, 757080.0 1.4
BXD32/TyJ m 622310.0 0.0   1   0.0 0.0 622310.0, 622310.0 0.15
BXD33/TyJ m 760619.0 0.0   1   0.0 0.0 760619.0, 760619.0 1.43
BXD34/TyJ m 706088.0 0.0   1   0.0 0.0 706088.0, 706088.0 0.93
BXD36/TyJ m 649033.0 0.0   1   0.0 0.0 649033.0, 649033.0 0.4
BXD38/TyJ m 837393.0 0.0   1   0.0 0.0 837393.0, 837393.0 2.15
BXD39/TyJ m 630187.0 0.0   1   0.0 0.0 630187.0, 630187.0 0.22
BXD40/TyJ m 824374.0 0.0   1   0.0 0.0 824374.0, 824374.0 2.02
BXD42/TyJ m 578585.0 0.0   1   0.0 0.0 578585.0, 578585.0 -0.26
BXD5/TyJ m 540805.0 0.0   1   0.0 0.0 540805.0, 540805.0 -0.61
BXD6/TyJ m 679940.0 0.0   1   0.0 0.0 679940.0, 679940.0 0.68
BXD8/TyJ m 518748.0 0.0   1   0.0 0.0 518748.0, 518748.0 -0.82
BXD9/TyJ m 669240.0 0.0   1   0.0 0.0 669240.0, 669240.0 0.58
BXH10/TyJ m 724974.0 0.0   1   0.0 0.0 724974.0, 724974.0 1.1
BXH19/TyJ m 482154.0 0.0   1   0.0 0.0 482154.0, 482154.0 -1.16
BXH20/KccJ m 668913.0 0.0   1   0.0 0.0 668913.0, 668913.0 0.58
BXH22/KccJ m 690746.0 0.0   1   0.0 0.0 690746.0, 690746.0 0.78
BXH2/TyJ m 597324.0 0.0   1   0.0 0.0 597324.0, 597324.0 -0.09
BXH4/TyJ m 505062.0 75910.0   2   53677.0 0.15 451385.0, 558738.0 -0.94
BXH6/TyJ m 718379.0 0.0   1   0.0 0.0 718379.0, 718379.0 1.04
BXH7/TyJ m 606600.0 0.0   1   0.0 0.0 606600.0, 606600.0 0.0
BXH8/TyJ m 444347.0 0.0   1   0.0 0.0 444347.0, 444347.0 -1.51
BXH9/TyJ m 677006.0 0.0   1   0.0 0.0 677006.0, 677006.0 0.66
C3H/HeJ m 544138.0 41781.0   2   29543.0 0.0768 514594.0, 573681.0 -0.58
C57BL/6J m 586342.0 89808.0   5 40163.0 0.153 507637.0, 736392.0 -0.19
C57L/J m 769604.0 0.0   1   0.0 0.0 769604.0, 769604.0 1.52
C58/J m 845697.0 0.0   1   0.0 0.0 845697.0, 845697.0 2.22
CAST/EiJ m 634597.0 0.0   1   0.0 0.0 634597.0, 634597.0 0.26
CBA/J m 612005.0 0.0   1   0.0 0.0 612005.0, 612005.0 0.05
CE/J m 516853.0 0.0   1   0.0 0.0 516853.0, 516853.0 -0.83
CXB11/HiAJ m 653287.0 81995.0   2   57980.0 0.126 595308.0, 711267.0 0.43
CXB12/HiAJ m 513305.0 41273.0   2   29185.0 0.0804 484120.0, 542489.0 -0.87
CXB13/HiAJ m 666909.0 265466.0   3 153267.0 0.398 507012.0, 973346.0 0.56
CXB1/ByJ m 530160.0 74250.0   3 42868.0 0.14 475275.0, 614644.0 -0.71
CXB2/ByJ m 680234.0 139366.0   3 80463.0 0.205 553750.0, 829641.0 0.69
CXB3/ByJ m 519848.0 38472.0   2   27204.0 0.074 492644.0, 547053.0 -0.81
CXB4/ByJ m 499509.0 31491.0   2   22267.0 0.063 477241.0, 521776.0 -0.99
CXB6/ByJ m 542598.0 50796.0   3 29327.0 0.0936 507767.0, 600884.0 -0.59
CXB7/ByJ m 438109.0 8512.0   2   6019.0 0.0194 432090.0, 444128.0 -1.56
CXB8/HiAJ m 588363.0 66032.0   3 38123.0 0.112 512204.0, 629616.0 -0.17
CXB9/HiAJ m 554073.0 96259.0   3 55575.0 0.174 445028.0, 627246.0 -0.49
DBA/2J m 657156.0 42130.0   4 21065.0 0.0641 595731.0, 691374.0 0.47
FVB/NJ m 741854.0 0.0   1   0.0 0.0 741854.0, 741854.0 1.26
I/LnJ m 600813.0 0.0   1   0.0 0.0 600813.0, 600813.0 -0.05
KK/HlJ m 482609.0 0.0   1   0.0 0.0 482609.0, 482609.0 -1.15
LG/J m 498831.0 0.0   1   0.0 0.0 498831.0, 498831.0 -1.0
LP/J m 695428.0 0.0   1   0.0 0.0 695428.0, 695428.0 0.83
MA/MyJ m 484944.0 0.0   1   0.0 0.0 484944.0, 484944.0 -1.13
NOD/ShiLtJ m 769771.0 0.0   1   0.0 0.0 769771.0, 769771.0 1.52
NON/ShiLtJ m 589349.0 0.0   1   0.0 0.0 589349.0, 589349.0 -0.16
NZW/LacJ m 511662.0 0.0   1   0.0 0.0 511662.0, 511662.0 -0.88
PL/J m 812401.0 0.0   1   0.0 0.0 812401.0, 812401.0 1.91
RIIIS/J m 665308.0 0.0   1   0.0 0.0 665308.0, 665308.0 0.55
SEA/GnJ m 699074.0 0.0   1   0.0 0.0 699074.0, 699074.0 0.86
SJL/J m 504164.0 0.0   1   0.0 0.0 504164.0, 504164.0 -0.95
SM/J m 678626.0 0.0   1   0.0 0.0 678626.0, 678626.0 0.67
SWR/J m 642254.0 0.0   1   0.0 0.0 642254.0, 642254.0 0.33


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 528454.65 67793.3275 666227.2677 390682.0323
AXB19b/PgnJ m 700336.15 67793.3275 838108.7677 562563.5323
AXB24/PgnJ m 408780.7 67793.3275 546553.3177 271008.0823
BALB/cJ m 587032.4667 55353.0201 699523.3379 474541.5954
BXA16/PgnJ m 537607.15 67793.3275 675379.7677 399834.5323
BXD19/TyJ m 628155.8 67793.3275 765928.4177 490383.1823
BXD28/TyJ m 565633.75 67793.3275 703406.3677 427861.1323
BXH4/TyJ m 505061.55 67793.3275 642834.1677 367288.9323
C3H/HeJ m 544137.6 67793.3275 681910.2177 406364.9823
C57BL/6J m 586341.68 42876.265 673476.7342 499206.6258
CXB11/HiAJ m 653287.35 67793.3275 791059.9677 515514.7323
CXB12/HiAJ m 513304.7 67793.3275 651077.3177 375532.0823
CXB13/HiAJ m 666909.1 55353.0201 779399.9713 554418.2287
CXB1/ByJ m 530159.9667 55353.0201 642650.8379 417669.0954
CXB2/ByJ m 680234.0 55353.0201 792724.8713 567743.1287
CXB3/ByJ m 519848.45 67793.3275 657621.0677 382075.8323
CXB4/ByJ m 499508.8 67793.3275 637281.4177 361736.1823
CXB6/ByJ m 542598.3667 55353.0201 655089.2379 430107.4954
CXB7/ByJ m 438108.7 67793.3275 575881.3177 300336.0823
CXB8/HiAJ m 588362.8333 55353.0201 700853.7046 475871.9621
CXB9/HiAJ m 554072.8 55353.0201 666563.6713 441581.9287
DBA/2J m 657156.15 47937.1216 754576.1022 559736.1978




  GWAS USING LINEAR MIXED MODELS