Phenotype measure:   HMDPpheno7   pantothenate

ID, description, units MPD:50234   pantothenate   pantothenate (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   106 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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HMDPpheno7 - pantothenate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested106 strains
Mean of the strain means1773261   None
Median of the strain means1780904   None
SD of the strain means± 252166
Coefficient of variation (CV)0.142
Min–max range of strain means1131914   –   2509374   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 21 962270109325.927 45822386158.3775 2.8549 0.0032
Residuals 34 545724184181.367 16050711299.452


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 1647900.0 0.0   1   0.0 0.0 1647900.0, 1647900.0 -0.5
A/J m 1686484.0 168376.0   2   119060.0 0.0998 1567424.0, 1805545.0 -0.34
AKR/J m 1381646.0 0.0   1   0.0 0.0 1381646.0, 1381646.0 -1.55
AXB10/PgnJ m 1986668.0 0.0   1   0.0 0.0 1986668.0, 1986668.0 0.85
AXB12/PgnJ m 1815568.0 0.0   1   0.0 0.0 1815568.0, 1815568.0 0.17
AXB13/PgnJ m 1848047.0 0.0   1   0.0 0.0 1848047.0, 1848047.0 0.3
AXB15/PgnJ m 1945086.0 0.0   1   0.0 0.0 1945086.0, 1945086.0 0.68
AXB19a/PgnJ m 1606342.0 0.0   1   0.0 0.0 1606342.0, 1606342.0 -0.66
AXB19b/PgnJ m 1850938.0 124210.0   2   87830.0 0.0671 1763108.0, 1938768.0 0.31
AXB19/PgnJ m 1960408.0 0.0   1   0.0 0.0 1960408.0, 1960408.0 0.74
AXB1/PgnJ m 1708719.0 0.0   1   0.0 0.0 1708719.0, 1708719.0 -0.26
AXB23/PgnJ m 1908403.0 0.0   1   0.0 0.0 1908403.0, 1908403.0 0.54
AXB24/PgnJ m 1744589.0 79528.0   2   56235.0 0.0456 1688355.0, 1800824.0 -0.11
AXB2/PgnJ m 2024165.0 0.0   1   0.0 0.0 2024165.0, 2024165.0 0.99
AXB4/PgnJ m 1701846.0 0.0   1   0.0 0.0 1701846.0, 1701846.0 -0.28
AXB5/PgnJ m 1676856.0 0.0   1   0.0 0.0 1676856.0, 1676856.0 -0.38
AXB6/PgnJ m 1703888.0 0.0   1   0.0 0.0 1703888.0, 1703888.0 -0.28
AXB8/PgnJ m 1935665.0 0.0   1   0.0 0.0 1935665.0, 1935665.0 0.64
BALB/cJ m 1643430.0 56199.0   3 32447.0 0.0342 1588646.0, 1700945.0 -0.51
BTBR T+ Itpr3tf/J m 1318289.0 0.0   1   0.0 0.0 1318289.0, 1318289.0 -1.8
BUB/BnJ m 1888174.0 0.0   1   0.0 0.0 1888174.0, 1888174.0 0.46
BXA11/PgnJ m 1997391.0 0.0   1   0.0 0.0 1997391.0, 1997391.0 0.89
BXA12/PgnJ m 1563609.0 0.0   1   0.0 0.0 1563609.0, 1563609.0 -0.83
BXA13/PgnJ m 1879039.0 0.0   1   0.0 0.0 1879039.0, 1879039.0 0.42
BXA14/PgnJ m 1342932.0 0.0   1   0.0 0.0 1342932.0, 1342932.0 -1.71
BXA16/PgnJ m 1828649.0 78907.0   2   55796.0 0.0432 1772854.0, 1884445.0 0.22
BXA1/PgnJ m 1895689.0 0.0   1   0.0 0.0 1895689.0, 1895689.0 0.49
BXA24/PgnJ m 1819244.0 0.0   1   0.0 0.0 1819244.0, 1819244.0 0.18
BXA25/PgnJ m 1745714.0 0.0   1   0.0 0.0 1745714.0, 1745714.0 -0.11
BXA26/PgnJ m 2059132.0 0.0   1   0.0 0.0 2059132.0, 2059132.0 1.13
BXA2/PgnJ m 1795628.0 0.0   1   0.0 0.0 1795628.0, 1795628.0 0.09
BXA4/PgnJ m 1269462.0 0.0   1   0.0 0.0 1269462.0, 1269462.0 -2.0
BXA7/PgnJ m 1536468.0 0.0   1   0.0 0.0 1536468.0, 1536468.0 -0.94
BXA8/PgnJ m 1844910.0 0.0   1   0.0 0.0 1844910.0, 1844910.0 0.28
BXD11/TyJ m 1905754.0 0.0   1   0.0 0.0 1905754.0, 1905754.0 0.53
BXD12/TyJ m 2110416.0 0.0   1   0.0 0.0 2110416.0, 2110416.0 1.34
BXD13/TyJ m 1518514.0 0.0   1   0.0 0.0 1518514.0, 1518514.0 -1.01
BXD14/TyJ m 1977188.0 0.0   1   0.0 0.0 1977188.0, 1977188.0 0.81
BXD15/TyJ m 2000263.0 0.0   1   0.0 0.0 2000263.0, 2000263.0 0.9
BXD18/TyJ m 1563580.0 0.0   1   0.0 0.0 1563580.0, 1563580.0 -0.83
BXD19/TyJ m 1974056.0 172893.0   2   122254.0 0.0876 1851802.0, 2096310.0 0.8
BXD1/TyJ m 2114464.0 0.0   1   0.0 0.0 2114464.0, 2114464.0 1.35
BXD20/TyJ m 2044041.0 0.0   1   0.0 0.0 2044041.0, 2044041.0 1.07
BXD21/TyJ m 1749110.0 0.0   1   0.0 0.0 1749110.0, 1749110.0 -0.1
BXD22/TyJ m 2509374.0 0.0   1   0.0 0.0 2509374.0, 2509374.0 2.92
BXD24/TyJ m 2278710.0 0.0   1   0.0 0.0 2278710.0, 2278710.0 2.0
BXD24/TyJ-Cep290rd16/J m 1945118.0 0.0   1   0.0 0.0 1945118.0, 1945118.0 0.68
BXD28/TyJ m 1903204.0 164537.0   2   116346.0 0.0865 1786858.0, 2019549.0 0.52
BXD29-Tlr4lps-2J/J m 2338480.0 0.0   1   0.0 0.0 2338480.0, 2338480.0 2.24
BXD2/TyJ m 1692325.0 0.0   1   0.0 0.0 1692325.0, 1692325.0 -0.32
BXD32/TyJ m 1889216.0 0.0   1   0.0 0.0 1889216.0, 1889216.0 0.46
BXD33/TyJ m 1965139.0 0.0   1   0.0 0.0 1965139.0, 1965139.0 0.76
BXD34/TyJ m 2269746.0 0.0   1   0.0 0.0 2269746.0, 2269746.0 1.97
BXD36/TyJ m 1865875.0 0.0   1   0.0 0.0 1865875.0, 1865875.0 0.37
BXD38/TyJ m 1732987.0 0.0   1   0.0 0.0 1732987.0, 1732987.0 -0.16
BXD39/TyJ m 1928067.0 0.0   1   0.0 0.0 1928067.0, 1928067.0 0.61
BXD40/TyJ m 1884792.0 0.0   1   0.0 0.0 1884792.0, 1884792.0 0.44
BXD42/TyJ m 1751332.0 0.0   1   0.0 0.0 1751332.0, 1751332.0 -0.09
BXD5/TyJ m 2410077.0 0.0   1   0.0 0.0 2410077.0, 2410077.0 2.53
BXD6/TyJ m 1729582.0 0.0   1   0.0 0.0 1729582.0, 1729582.0 -0.17
BXD8/TyJ m 1717095.0 0.0   1   0.0 0.0 1717095.0, 1717095.0 -0.22
BXD9/TyJ m 2083598.0 0.0   1   0.0 0.0 2083598.0, 2083598.0 1.23
BXH10/TyJ m 2054790.0 0.0   1   0.0 0.0 2054790.0, 2054790.0 1.12
BXH19/TyJ m 1270422.0 0.0   1   0.0 0.0 1270422.0, 1270422.0 -1.99
BXH20/KccJ m 1824123.0 0.0   1   0.0 0.0 1824123.0, 1824123.0 0.2
BXH22/KccJ m 1782569.0 0.0   1   0.0 0.0 1782569.0, 1782569.0 0.04
BXH2/TyJ m 1566190.0 0.0   1   0.0 0.0 1566190.0, 1566190.0 -0.82
BXH4/TyJ m 1750577.0 49399.0   2   34930.0 0.0282 1715646.0, 1785507.0 -0.09
BXH6/TyJ m 1869811.0 0.0   1   0.0 0.0 1869811.0, 1869811.0 0.38
BXH7/TyJ m 1815278.0 0.0   1   0.0 0.0 1815278.0, 1815278.0 0.17
BXH8/TyJ m 1426603.0 0.0   1   0.0 0.0 1426603.0, 1426603.0 -1.37
BXH9/TyJ m 1631402.0 0.0   1   0.0 0.0 1631402.0, 1631402.0 -0.56
C3H/HeJ m 1595950.0 7244.0   2   5122.0 0.00454 1590828.0, 1601072.0 -0.7
C57BL/6J m 1707218.0 101999.0   5 45615.0 0.0597 1610038.0, 1843052.0 -0.26
C57L/J m 1416587.0 0.0   1   0.0 0.0 1416587.0, 1416587.0 -1.41
C58/J m 1824116.0 0.0   1   0.0 0.0 1824116.0, 1824116.0 0.2
CAST/EiJ m 1347388.0 0.0   1   0.0 0.0 1347388.0, 1347388.0 -1.69
CBA/J m 1753398.0 0.0   1   0.0 0.0 1753398.0, 1753398.0 -0.08
CE/J m 1571325.0 0.0   1   0.0 0.0 1571325.0, 1571325.0 -0.8
CXB11/HiAJ m 1743125.0 225871.0   2   159715.0 0.13 1583410.0, 1902839.0 -0.12
CXB12/HiAJ m 1736794.0 37222.0   2   26320.0 0.0214 1710475.0, 1763114.0 -0.14
CXB13/HiAJ m 1873450.0 126015.0   3 72755.0 0.0673 1743976.0, 1995695.0 0.4
CXB1/ByJ m 1471899.0 68932.0   3 39798.0 0.0468 1400150.0, 1537617.0 -1.2
CXB2/ByJ m 1896553.0 95791.0   3 55305.0 0.0505 1791991.0, 1980076.0 0.49
CXB3/ByJ m 1379857.0 51381.0   2   36332.0 0.0372 1343525.0, 1416189.0 -1.56
CXB4/ByJ m 1779240.0 256392.0   2   181297.0 0.144 1597944.0, 1960537.0 0.02
CXB6/ByJ m 1832394.0 136752.0   3 78954.0 0.0746 1675584.0, 1926893.0 0.23
CXB7/ByJ m 1822440.0 93727.0   2   66275.0 0.0514 1756164.0, 1888715.0 0.2
CXB8/HiAJ m 1716831.0 140038.0   3 80851.0 0.0816 1555142.0, 1799391.0 -0.22
CXB9/HiAJ m 1766397.0 234992.0   3 135673.0 0.133 1604114.0, 2035872.0 -0.03
DBA/2J m 1652806.0 43819.0   4 21909.0 0.0265 1593354.0, 1696891.0 -0.48
FVB/NJ m 1559132.0 0.0   1   0.0 0.0 1559132.0, 1559132.0 -0.85
I/LnJ m 1661986.0 0.0   1   0.0 0.0 1661986.0, 1661986.0 -0.44
KK/HlJ m 1380401.0 0.0   1   0.0 0.0 1380401.0, 1380401.0 -1.56
LG/J m 1218962.0 0.0   1   0.0 0.0 1218962.0, 1218962.0 -2.2
LP/J m 1457848.0 0.0   1   0.0 0.0 1457848.0, 1457848.0 -1.25
MA/MyJ m 1570880.0 0.0   1   0.0 0.0 1570880.0, 1570880.0 -0.8
NOD/ShiLtJ m 2006727.0 0.0   1   0.0 0.0 2006727.0, 2006727.0 0.93
NON/ShiLtJ m 1515026.0 0.0   1   0.0 0.0 1515026.0, 1515026.0 -1.02
NZW/LacJ m 1603463.0 0.0   1   0.0 0.0 1603463.0, 1603463.0 -0.67
PL/J m 1841743.0 0.0   1   0.0 0.0 1841743.0, 1841743.0 0.27
RIIIS/J m 1706234.0 0.0   1   0.0 0.0 1706234.0, 1706234.0 -0.27
SEA/GnJ m 2000833.0 0.0   1   0.0 0.0 2000833.0, 2000833.0 0.9
SJL/J m 1131914.0 0.0   1   0.0 0.0 1131914.0, 1131914.0 -2.54
SM/J m 2207236.0 0.0   1   0.0 0.0 2207236.0, 2207236.0 1.72
SWR/J m 1810701.0 0.0   1   0.0 0.0 1810701.0, 1810701.0 0.15


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 1686484.45 89584.3494 1868541.7521 1504427.1479
AXB19b/PgnJ m 1850938.0 89584.3494 2032995.3021 1668880.6979
AXB24/PgnJ m 1744589.4 89584.3494 1926646.7021 1562532.0979
BALB/cJ m 1643430.0333 73145.315 1792079.198 1494780.8686
BXA16/PgnJ m 1828649.35 89584.3494 2010706.6521 1646592.0479
BXD19/TyJ m 1974056.45 89584.3494 2156113.7521 1791999.1479
BXD28/TyJ m 1903203.6 89584.3494 2085260.9021 1721146.2979
BXH4/TyJ m 1750576.55 89584.3494 1932633.8521 1568519.2479
C3H/HeJ m 1595950.0 89584.3494 1778007.3021 1413892.6979
C57BL/6J m 1707218.26 56658.1173 1822361.4079 1592075.1121
CXB11/HiAJ m 1743124.75 89584.3494 1925182.0521 1561067.4479
CXB12/HiAJ m 1736794.3 89584.3494 1918851.6021 1554736.9979
CXB13/HiAJ m 1873449.7667 73145.315 2022098.9314 1724800.602
CXB1/ByJ m 1471898.5333 73145.315 1620547.698 1323249.3686
CXB2/ByJ m 1896553.3333 73145.315 2045202.498 1747904.1686
CXB3/ByJ m 1379856.9 89584.3494 1561914.2021 1197799.5979
CXB4/ByJ m 1779240.2 89584.3494 1961297.5021 1597182.8979
CXB6/ByJ m 1832394.2333 73145.315 1981043.398 1683745.0686
CXB7/ByJ m 1822439.6 89584.3494 2004496.9021 1640382.2979
CXB8/HiAJ m 1716831.3667 73145.315 1865480.5314 1568182.202
CXB9/HiAJ m 1766397.2 73145.315 1915046.3647 1617748.0353
DBA/2J m 1652805.75 63345.7009 1781539.7029 1524071.7971




  GWAS USING LINEAR MIXED MODELS