Phenotype measure:   HMDPpheno7   arabonate

ID, description, units MPD:50224   arabonate   liver arabonate (16h fast), relative abundance  
Data set, strains HMDPpheno7   HMDP   85 strains     sex: m     age: 16wks
Procedure metabolite quantification
Ontology mappings

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

HMDPpheno7 - liver arabonate (16h fast), relative abundance



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested85 strains
Mean of the strain means22197   None
Median of the strain means21154   None
SD of the strain means± 7108
Coefficient of variation (CV)0.320
Min–max range of strain means10438   –   64017   None
Mean sample size per strain1.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 18 851629427.4478 47312745.9693 1.1767 0.3449
Residuals 26 1045415977.4687 40208306.8257


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ m 18517.0 0.0   1   0.0 0.0 18517.0, 18517.0 -0.52
A/J m 27193.0 2067.0   2   1462.0 0.076 25732.0, 28655.0 0.7
AKR/J m 17442.0 0.0   1   0.0 0.0 17442.0, 17442.0 -0.67
AXB10/PgnJ m 31152.0 0.0   1   0.0 0.0 31152.0, 31152.0 1.26
AXB12/PgnJ m 18814.0 0.0   1   0.0 0.0 18814.0, 18814.0 -0.48
AXB13/PgnJ m 25223.0 0.0   1   0.0 0.0 25223.0, 25223.0 0.43
AXB19b/PgnJ m 19639.0 3112.0   2   2200.0 0.158 17438.0, 21839.0 -0.36
AXB19/PgnJ m 18284.0 0.0   1   0.0 0.0 18284.0, 18284.0 -0.55
AXB23/PgnJ m 14693.0 0.0   1   0.0 0.0 14693.0, 14693.0 -1.06
AXB24/PgnJ m 24691.0 0.0   1   0.0 0.0 24691.0, 24691.0 0.35
AXB2/PgnJ m 20662.0 0.0   1   0.0 0.0 20662.0, 20662.0 -0.22
AXB5/PgnJ m 18343.0 0.0   1   0.0 0.0 18343.0, 18343.0 -0.54
AXB6/PgnJ m 18769.0 0.0   1   0.0 0.0 18769.0, 18769.0 -0.48
AXB8/PgnJ m 19335.0 0.0   1   0.0 0.0 19335.0, 19335.0 -0.4
BALB/cJ m 18260.0 4017.0   3 2319.0 0.22 13877.0, 21766.0 -0.55
BTBR T+ Itpr3tf/J m 64017.0 0.0   1   0.0 0.0 64017.0, 64017.0 5.88
BUB/BnJ m 14446.0 0.0   1   0.0 0.0 14446.0, 14446.0 -1.09
BXA11/PgnJ m 23579.0 0.0   1   0.0 0.0 23579.0, 23579.0 0.19
BXA12/PgnJ m 22708.0 0.0   1   0.0 0.0 22708.0, 22708.0 0.07
BXA13/PgnJ m 18677.0 0.0   1   0.0 0.0 18677.0, 18677.0 -0.5
BXA14/PgnJ m 31952.0 0.0   1   0.0 0.0 31952.0, 31952.0 1.37
BXA1/PgnJ m 20148.0 0.0   1   0.0 0.0 20148.0, 20148.0 -0.29
BXA24/PgnJ m 22528.0 0.0   1   0.0 0.0 22528.0, 22528.0 0.05
BXA25/PgnJ m 30038.0 0.0   1   0.0 0.0 30038.0, 30038.0 1.1
BXA2/PgnJ m 22312.0 0.0   1   0.0 0.0 22312.0, 22312.0 0.02
BXA7/PgnJ m 21031.0 0.0   1   0.0 0.0 21031.0, 21031.0 -0.16
BXA8/PgnJ m 22189.0 0.0   1   0.0 0.0 22189.0, 22189.0 0.0
BXD11/TyJ m 16548.0 0.0   1   0.0 0.0 16548.0, 16548.0 -0.79
BXD12/TyJ m 21154.0 0.0   1   0.0 0.0 21154.0, 21154.0 -0.15
BXD13/TyJ m 24309.0 0.0   1   0.0 0.0 24309.0, 24309.0 0.3
BXD14/TyJ m 16292.0 0.0   1   0.0 0.0 16292.0, 16292.0 -0.83
BXD15/TyJ m 27143.0 0.0   1   0.0 0.0 27143.0, 27143.0 0.7
BXD18/TyJ m 11816.0 0.0   1   0.0 0.0 11816.0, 11816.0 -1.46
BXD19/TyJ m 21180.0 1080.0   2   764.0 0.051 20416.0, 21944.0 -0.14
BXD20/TyJ m 26016.0 0.0   1   0.0 0.0 26016.0, 26016.0 0.54
BXD21/TyJ m 14834.0 0.0   1   0.0 0.0 14834.0, 14834.0 -1.04
BXD22/TyJ m 21610.0 0.0   1   0.0 0.0 21610.0, 21610.0 -0.08
BXD24/TyJ-Cep290rd16/J m 20433.0 0.0   1   0.0 0.0 20433.0, 20433.0 -0.25
BXD28/TyJ m 15488.0 1631.0   2   1153.0 0.105 14335.0, 16641.0 -0.94
BXD2/TyJ m 21066.0 0.0   1   0.0 0.0 21066.0, 21066.0 -0.16
BXD32/TyJ m 13001.0 0.0   1   0.0 0.0 13001.0, 13001.0 -1.29
BXD34/TyJ m 10438.0 0.0   1   0.0 0.0 10438.0, 10438.0 -1.65
BXD36/TyJ m 16811.0 0.0   1   0.0 0.0 16811.0, 16811.0 -0.76
BXD38/TyJ m 19930.0 0.0   1   0.0 0.0 19930.0, 19930.0 -0.32
BXD39/TyJ m 35025.0 0.0   1   0.0 0.0 35025.0, 35025.0 1.8
BXD40/TyJ m 19664.0 0.0   1   0.0 0.0 19664.0, 19664.0 -0.36
BXD42/TyJ m 18074.0 0.0   1   0.0 0.0 18074.0, 18074.0 -0.58
BXD5/TyJ m 26372.0 0.0   1   0.0 0.0 26372.0, 26372.0 0.59
BXD6/TyJ m 25719.0 0.0   1   0.0 0.0 25719.0, 25719.0 0.5
BXD8/TyJ m 27884.0 0.0   1   0.0 0.0 27884.0, 27884.0 0.8
BXD9/TyJ m 23287.0 0.0   1   0.0 0.0 23287.0, 23287.0 0.15
BXH10/TyJ m 20185.0 0.0   1   0.0 0.0 20185.0, 20185.0 -0.28
BXH19/TyJ m 21118.0 0.0   1   0.0 0.0 21118.0, 21118.0 -0.15
BXH20/KccJ m 24417.0 0.0   1   0.0 0.0 24417.0, 24417.0 0.31
BXH22/KccJ m 24459.0 0.0   1   0.0 0.0 24459.0, 24459.0 0.32
BXH4/TyJ m 20913.0 10222.0   2   7228.0 0.489 13685.0, 28140.0 -0.18
BXH6/TyJ m 27277.0 0.0   1   0.0 0.0 27277.0, 27277.0 0.71
BXH7/TyJ m 20120.0 0.0   1   0.0 0.0 20120.0, 20120.0 -0.29
BXH8/TyJ m 27812.0 0.0   1   0.0 0.0 27812.0, 27812.0 0.79
C3H/HeJ m 19342.0 10362.0   2   7327.0 0.536 12015.0, 26669.0 -0.4
C57BL/6J m 21905.0 5761.0   5 2576.0 0.263 17980.0, 31966.0 -0.04
CAST/EiJ m 37173.0 0.0   1   0.0 0.0 37173.0, 37173.0 2.11
CE/J m 19910.0 0.0   1   0.0 0.0 19910.0, 19910.0 -0.32
CXB11/HiAJ m 25318.0 14093.0   2   9965.0 0.557 15353.0, 35283.0 0.44
CXB12/HiAJ m 14910.0 0.0   1   0.0 0.0 14910.0, 14910.0 -1.03
CXB13/HiAJ m 24717.0 8774.0   3 5066.0 0.355 14670.0, 30875.0 0.35
CXB1/ByJ m 28696.0 830.0   2   587.0 0.0289 28109.0, 29282.0 0.91
CXB2/ByJ m 12407.0 6414.0   2   4535.0 0.517 7872.0, 16943.0 -1.38
CXB3/ByJ m 29534.0 4330.0   2   3062.0 0.147 26472.0, 32596.0 1.03
CXB4/ByJ m 22321.0 255.0   2   181.0 0.0114 22140.0, 22502.0 0.02
CXB6/ByJ m 13580.0 4641.0   2   3282.0 0.342 10298.0, 16861.0 -1.21
CXB7/ByJ m 27302.0 8736.0   2   6177.0 0.32 21125.0, 33479.0 0.72
CXB8/HiAJ m 22660.0 5205.0   3 3005.0 0.23 17241.0, 27621.0 0.07
CXB9/HiAJ m 22393.0 8247.0   2   5831.0 0.368 16561.0, 28224.0 0.03
DBA/2J m 19781.0 2957.0   3 1707.0 0.15 16381.0, 21757.0 -0.34
FVB/NJ m 14492.0 0.0   1   0.0 0.0 14492.0, 14492.0 -1.08
KK/HlJ m 27255.0 0.0   1   0.0 0.0 27255.0, 27255.0 0.71
LG/J m 22444.0 0.0   1   0.0 0.0 22444.0, 22444.0 0.03
LP/J m 24409.0 0.0   1   0.0 0.0 24409.0, 24409.0 0.31
MA/MyJ m 13414.0 0.0   1   0.0 0.0 13414.0, 13414.0 -1.24
PL/J m 16101.0 0.0   1   0.0 0.0 16101.0, 16101.0 -0.86
RIIIS/J m 36077.0 0.0   1   0.0 0.0 36077.0, 36077.0 1.95
SEA/GnJ m 21799.0 0.0   1   0.0 0.0 21799.0, 21799.0 -0.06
SJL/J m 26664.0 0.0   1   0.0 0.0 26664.0, 26664.0 0.63
SWR/J m 17100.0 0.0   1   0.0 0.0 17100.0, 17100.0 -0.72


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J m 27193.15 4483.7655 36409.6621 17976.6379
AXB19b/PgnJ m 19638.6 4483.7655 28855.1121 10422.0879
BALB/cJ m 18260.0667 3660.9792 25785.3173 10734.8161
BXD19/TyJ m 21180.2 4483.7655 30396.7121 11963.6879
BXD28/TyJ m 15488.35 4483.7655 24704.8621 6271.8379
BXH4/TyJ m 20912.8 4483.7655 30129.3121 11696.2879
C3H/HeJ m 19341.65 4483.7655 28558.1621 10125.1379
C57BL/6J m 21905.14 2835.7823 27734.174 16076.106
CXB11/HiAJ m 25318.05 4483.7655 34534.5621 16101.5379
CXB13/HiAJ m 24716.9667 3660.9792 32242.2173 17191.7161
CXB1/ByJ m 28695.75 4483.7655 37912.2621 19479.2379
CXB2/ByJ m 12407.2 4483.7655 21623.7121 3190.6879
CXB3/ByJ m 29534.15 4483.7655 38750.6621 20317.6379
CXB4/ByJ m 22320.95 4483.7655 31537.4621 13104.4379
CXB6/ByJ m 13579.75 4483.7655 22796.2621 4363.2379
CXB7/ByJ m 27301.65 4483.7655 36518.1621 18085.1379
CXB8/HiAJ m 22659.5667 3660.9792 30184.8173 15134.3161
CXB9/HiAJ m 22392.55 4483.7655 31609.0621 13176.0379
DBA/2J m 19781.2667 3660.9792 27306.5173 12256.0161




  GWAS USING LINEAR MIXED MODELS